Hb_012114_050

Information

Type -
Description -
Location Contig12114: 32072-36379
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09380g
description POPTRDRAFT_1066903; bromo-adjacent homology (BAH) domain-containing family protein
nr
ID XP_012086911.1
description PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20598 PE=4 SV=1
Gene Ontology
ID GO:0003682
description bromo-adjacent homology domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06504: 32399-36290 , PASA_asmbl_06505: 32397-36293
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012114_050 0.0 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
2 Hb_007193_110 0.044170359 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
3 Hb_004410_070 0.0788676537 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
4 Hb_000556_170 0.0795945034 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
5 Hb_000625_120 0.082226168 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
6 Hb_000094_320 0.0838370588 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
7 Hb_007576_220 0.0844289133 - - PREDICTED: kanadaptin [Jatropha curcas]
8 Hb_000926_010 0.0847626203 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
9 Hb_018301_010 0.0849273996 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
10 Hb_029695_020 0.0861807137 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
11 Hb_001141_370 0.0870617394 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
12 Hb_118840_050 0.0873214993 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
13 Hb_000723_110 0.0891298602 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
14 Hb_000227_310 0.0899134161 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
15 Hb_007017_070 0.0903078607 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
16 Hb_000544_060 0.0916613881 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
17 Hb_013749_020 0.0921176412 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
18 Hb_001047_200 0.0942923258 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
19 Hb_000264_080 0.0946153589 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
20 Hb_000120_420 0.0964092693 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_012114_050 Hb_012114_050 Hb_007193_110 Hb_007193_110 Hb_012114_050--Hb_007193_110 Hb_004410_070 Hb_004410_070 Hb_012114_050--Hb_004410_070 Hb_000556_170 Hb_000556_170 Hb_012114_050--Hb_000556_170 Hb_000625_120 Hb_000625_120 Hb_012114_050--Hb_000625_120 Hb_000094_320 Hb_000094_320 Hb_012114_050--Hb_000094_320 Hb_007576_220 Hb_007576_220 Hb_012114_050--Hb_007576_220 Hb_007193_110--Hb_004410_070 Hb_007193_110--Hb_007576_220 Hb_007193_110--Hb_000094_320 Hb_007193_110--Hb_000556_170 Hb_001021_200 Hb_001021_200 Hb_007193_110--Hb_001021_200 Hb_007017_070 Hb_007017_070 Hb_004410_070--Hb_007017_070 Hb_000723_110 Hb_000723_110 Hb_004410_070--Hb_000723_110 Hb_002542_130 Hb_002542_130 Hb_004410_070--Hb_002542_130 Hb_000700_060 Hb_000700_060 Hb_004410_070--Hb_000700_060 Hb_010417_070 Hb_010417_070 Hb_004410_070--Hb_010417_070 Hb_000069_130 Hb_000069_130 Hb_004410_070--Hb_000069_130 Hb_000640_310 Hb_000640_310 Hb_000556_170--Hb_000640_310 Hb_000236_470 Hb_000236_470 Hb_000556_170--Hb_000236_470 Hb_003633_070 Hb_003633_070 Hb_000556_170--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_000556_170--Hb_001799_050 Hb_140049_040 Hb_140049_040 Hb_000556_170--Hb_140049_040 Hb_004480_040 Hb_004480_040 Hb_000556_170--Hb_004480_040 Hb_000230_430 Hb_000230_430 Hb_000625_120--Hb_000230_430 Hb_000625_120--Hb_007193_110 Hb_118840_050 Hb_118840_050 Hb_000625_120--Hb_118840_050 Hb_000625_120--Hb_007017_070 Hb_000345_490 Hb_000345_490 Hb_000625_120--Hb_000345_490 Hb_000347_120 Hb_000347_120 Hb_000094_320--Hb_000347_120 Hb_004371_010 Hb_004371_010 Hb_000094_320--Hb_004371_010 Hb_000526_060 Hb_000526_060 Hb_000094_320--Hb_000526_060 Hb_000094_320--Hb_004410_070 Hb_009449_090 Hb_009449_090 Hb_007576_220--Hb_009449_090 Hb_007576_230 Hb_007576_230 Hb_007576_220--Hb_007576_230 Hb_155159_010 Hb_155159_010 Hb_007576_220--Hb_155159_010 Hb_005539_040 Hb_005539_040 Hb_007576_220--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_007576_220--Hb_000086_050 Hb_002073_280 Hb_002073_280 Hb_007576_220--Hb_002073_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.0169 62.1893 32.5451 14.1659 37.9715 24.1328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7109 12.181 15.9761 25.2086 13.1085

CAGE analysis