Hb_012114_060

Information

Type -
Description -
Location Contig12114: 40482-43379
Sequence    

Annotation

kegg
ID rcu:RCOM_1686550
description hypothetical protein
nr
ID XP_012086910.1
description PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JN71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20597 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06506: 40539-43243 , PASA_asmbl_06507: 40539-43243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012114_060 0.0 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
2 Hb_000548_050 0.0767542114 - - hypothetical protein POPTR_0008s12570g [Populus trichocarpa]
3 Hb_005565_040 0.0878685375 - - conserved hypothetical protein [Ricinus communis]
4 Hb_052764_050 0.0916882736 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
5 Hb_000394_190 0.0943769955 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
6 Hb_001168_040 0.1000802233 - - -
7 Hb_000787_170 0.1034341913 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
8 Hb_003299_030 0.107096995 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
9 Hb_000175_090 0.1077610047 - - conserved hypothetical protein [Ricinus communis]
10 Hb_033095_020 0.1081831712 - - conserved hypothetical protein [Ricinus communis]
11 Hb_141532_010 0.1082882274 - - PREDICTED: protein SMG9-like [Jatropha curcas]
12 Hb_012799_110 0.1085178563 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
13 Hb_002043_090 0.1101370278 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
14 Hb_000939_060 0.1107737032 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
15 Hb_003467_010 0.1114365274 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
16 Hb_001288_080 0.1124654443 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
17 Hb_002272_020 0.1132691668 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
18 Hb_000261_250 0.1165948143 - - elongation factor 1-alpha [Lepidium sativum]
19 Hb_001105_010 0.117522288 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
20 Hb_011942_080 0.1197641382 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]

Gene co-expression network

sample Hb_012114_060 Hb_012114_060 Hb_000548_050 Hb_000548_050 Hb_012114_060--Hb_000548_050 Hb_005565_040 Hb_005565_040 Hb_012114_060--Hb_005565_040 Hb_052764_050 Hb_052764_050 Hb_012114_060--Hb_052764_050 Hb_000394_190 Hb_000394_190 Hb_012114_060--Hb_000394_190 Hb_001168_040 Hb_001168_040 Hb_012114_060--Hb_001168_040 Hb_000787_170 Hb_000787_170 Hb_012114_060--Hb_000787_170 Hb_000548_050--Hb_005565_040 Hb_000548_050--Hb_052764_050 Hb_012799_110 Hb_012799_110 Hb_000548_050--Hb_012799_110 Hb_011942_080 Hb_011942_080 Hb_000548_050--Hb_011942_080 Hb_000548_050--Hb_000394_190 Hb_000092_100 Hb_000092_100 Hb_005565_040--Hb_000092_100 Hb_001105_010 Hb_001105_010 Hb_005565_040--Hb_001105_010 Hb_029920_050 Hb_029920_050 Hb_005565_040--Hb_029920_050 Hb_005565_040--Hb_011942_080 Hb_001610_110 Hb_001610_110 Hb_052764_050--Hb_001610_110 Hb_001288_080 Hb_001288_080 Hb_052764_050--Hb_001288_080 Hb_001828_200 Hb_001828_200 Hb_052764_050--Hb_001828_200 Hb_001623_140 Hb_001623_140 Hb_052764_050--Hb_001623_140 Hb_000261_250 Hb_000261_250 Hb_000394_190--Hb_000261_250 Hb_000244_300 Hb_000244_300 Hb_000394_190--Hb_000244_300 Hb_000394_190--Hb_000787_170 Hb_003467_010 Hb_003467_010 Hb_000394_190--Hb_003467_010 Hb_000394_190--Hb_012799_110 Hb_033095_020 Hb_033095_020 Hb_000394_190--Hb_033095_020 Hb_001168_040--Hb_001623_140 Hb_001168_040--Hb_033095_020 Hb_001168_040--Hb_001288_080 Hb_000421_120 Hb_000421_120 Hb_001168_040--Hb_000421_120 Hb_000406_240 Hb_000406_240 Hb_001168_040--Hb_000406_240 Hb_001168_040--Hb_000394_190 Hb_000939_060 Hb_000939_060 Hb_000787_170--Hb_000939_060 Hb_000787_170--Hb_000261_250 Hb_000787_170--Hb_003467_010 Hb_035318_010 Hb_035318_010 Hb_000787_170--Hb_035318_010 Hb_000140_330 Hb_000140_330 Hb_000787_170--Hb_000140_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.72 19.1993 13.7841 8.09922 11.9102 28.0961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0075 15.5834 5.54402 6.37359 3.5819

CAGE analysis