Hb_012114_090

Information

Type -
Description -
Location Contig12114: 69733-71738
Sequence    

Annotation

kegg
ID rcu:RCOM_1686680
description tubulin beta chain, putative
nr
ID XP_002509801.1
description tubulin beta chain, putative [Ricinus communis]
swissprot
ID Q9ZPN9
description Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1
trembl
ID B9RCB7
description Tubulin beta chain, putative OS=Ricinus communis GN=RCOM_1686680 PE=3 SV=1
Gene Ontology
ID GO:0005737
description tubulin beta chain-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06510: 69733-71546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012114_090 0.0 - - tubulin beta chain, putative [Ricinus communis]
2 Hb_000336_120 0.0485661912 - - PREDICTED: mavicyanin [Populus euphratica]
3 Hb_000699_220 0.0542571585 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
4 Hb_001369_480 0.0680015493 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
5 Hb_006717_060 0.0695880636 - - PREDICTED: peroxidase 42 [Jatropha curcas]
6 Hb_000310_050 0.0715125097 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_001456_030 0.0759594005 - - PREDICTED: bifunctional pinoresinol-lariciresinol reductase 2 [Vitis vinifera]
8 Hb_005616_020 0.0815587409 - - kinase, putative [Ricinus communis]
9 Hb_009079_010 0.0822071695 - - JHL18I08.8 [Jatropha curcas]
10 Hb_003580_020 0.0870756291 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000608_090 0.0883290678 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005653_050 0.0911612521 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
13 Hb_001373_170 0.09143782 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
14 Hb_071079_040 0.0921295704 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
15 Hb_000497_030 0.0921602178 - - -
16 Hb_000531_030 0.0927160976 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004225_010 0.0932509402 - - -
18 Hb_001104_060 0.0933900117 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
19 Hb_003376_060 0.0948541809 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
20 Hb_001349_040 0.0952879713 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]

Gene co-expression network

sample Hb_012114_090 Hb_012114_090 Hb_000336_120 Hb_000336_120 Hb_012114_090--Hb_000336_120 Hb_000699_220 Hb_000699_220 Hb_012114_090--Hb_000699_220 Hb_001369_480 Hb_001369_480 Hb_012114_090--Hb_001369_480 Hb_006717_060 Hb_006717_060 Hb_012114_090--Hb_006717_060 Hb_000310_050 Hb_000310_050 Hb_012114_090--Hb_000310_050 Hb_001456_030 Hb_001456_030 Hb_012114_090--Hb_001456_030 Hb_015175_070 Hb_015175_070 Hb_000336_120--Hb_015175_070 Hb_000336_120--Hb_000310_050 Hb_000336_120--Hb_000699_220 Hb_000336_120--Hb_001369_480 Hb_000336_120--Hb_006717_060 Hb_000699_220--Hb_006717_060 Hb_000497_030 Hb_000497_030 Hb_000699_220--Hb_000497_030 Hb_001349_040 Hb_001349_040 Hb_000699_220--Hb_001349_040 Hb_005616_020 Hb_005616_020 Hb_000699_220--Hb_005616_020 Hb_001269_180 Hb_001269_180 Hb_001369_480--Hb_001269_180 Hb_055276_010 Hb_055276_010 Hb_001369_480--Hb_055276_010 Hb_001369_480--Hb_006717_060 Hb_001369_480--Hb_000699_220 Hb_006717_060--Hb_000497_030 Hb_003580_020 Hb_003580_020 Hb_006717_060--Hb_003580_020 Hb_006717_060--Hb_001349_040 Hb_006573_120 Hb_006573_120 Hb_000310_050--Hb_006573_120 Hb_000310_050--Hb_015175_070 Hb_000310_050--Hb_001349_040 Hb_000310_050--Hb_000699_220 Hb_001456_030--Hb_005616_020 Hb_003376_060 Hb_003376_060 Hb_001456_030--Hb_003376_060 Hb_000227_360 Hb_000227_360 Hb_001456_030--Hb_000227_360 Hb_000462_120 Hb_000462_120 Hb_001456_030--Hb_000462_120 Hb_001104_060 Hb_001104_060 Hb_001456_030--Hb_001104_060 Hb_000964_080 Hb_000964_080 Hb_001456_030--Hb_000964_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.148022 4.1876 28.2138 226.786 0.484703 0.122354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0259013 0 0.0385067 0.129887 64.5214

CAGE analysis