Hb_012114_100

Information

Type -
Description -
Location Contig12114: 77075-84755
Sequence    

Annotation

kegg
ID tcc:TCM_016247
description Kinase protein with tetratricopeptide repeat domain isoform 1
nr
ID XP_012086904.1
description PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
swissprot
ID Q9FHD7
description Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1
trembl
ID A0A067JNI0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20593 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at5g41260

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06512: 77649-82107 , PASA_asmbl_06513: 83564-84693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012114_100 0.0 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
2 Hb_012518_070 0.0617707314 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
3 Hb_006452_120 0.0624114824 - - PREDICTED: protein FAM188A [Jatropha curcas]
4 Hb_001440_020 0.063073553 - - exocyst componenet sec8, putative [Ricinus communis]
5 Hb_011249_070 0.0641390414 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
6 Hb_012055_040 0.0686144935 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
7 Hb_003498_080 0.0686501872 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
8 Hb_010515_020 0.0715568167 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
9 Hb_028487_160 0.0727849833 - - clathrin assembly protein, putative [Ricinus communis]
10 Hb_000208_280 0.0742095418 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
11 Hb_103684_010 0.0777327701 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
12 Hb_004030_080 0.0779987701 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
13 Hb_002874_110 0.0788845776 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
14 Hb_003097_140 0.0790448625 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
15 Hb_001329_250 0.079626587 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
16 Hb_004037_020 0.0800616785 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
17 Hb_003544_050 0.0811844501 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
18 Hb_009296_080 0.0816848371 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
19 Hb_002749_060 0.0825806735 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
20 Hb_002830_010 0.083473046 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_012114_100 Hb_012114_100 Hb_012518_070 Hb_012518_070 Hb_012114_100--Hb_012518_070 Hb_006452_120 Hb_006452_120 Hb_012114_100--Hb_006452_120 Hb_001440_020 Hb_001440_020 Hb_012114_100--Hb_001440_020 Hb_011249_070 Hb_011249_070 Hb_012114_100--Hb_011249_070 Hb_012055_040 Hb_012055_040 Hb_012114_100--Hb_012055_040 Hb_003498_080 Hb_003498_080 Hb_012114_100--Hb_003498_080 Hb_012518_070--Hb_001440_020 Hb_012518_070--Hb_012055_040 Hb_000317_100 Hb_000317_100 Hb_012518_070--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_012518_070--Hb_005215_010 Hb_000494_050 Hb_000494_050 Hb_012518_070--Hb_000494_050 Hb_010515_020 Hb_010515_020 Hb_006452_120--Hb_010515_020 Hb_004030_080 Hb_004030_080 Hb_006452_120--Hb_004030_080 Hb_000574_450 Hb_000574_450 Hb_006452_120--Hb_000574_450 Hb_008748_030 Hb_008748_030 Hb_006452_120--Hb_008748_030 Hb_000984_170 Hb_000984_170 Hb_006452_120--Hb_000984_170 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310 Hb_008511_020 Hb_008511_020 Hb_001440_020--Hb_008511_020 Hb_003097_140 Hb_003097_140 Hb_001440_020--Hb_003097_140 Hb_002675_030 Hb_002675_030 Hb_001440_020--Hb_002675_030 Hb_001329_250 Hb_001329_250 Hb_001440_020--Hb_001329_250 Hb_001712_060 Hb_001712_060 Hb_011249_070--Hb_001712_060 Hb_000300_270 Hb_000300_270 Hb_011249_070--Hb_000300_270 Hb_011249_070--Hb_012055_040 Hb_002883_030 Hb_002883_030 Hb_011249_070--Hb_002883_030 Hb_011249_070--Hb_003498_080 Hb_012055_040--Hb_000494_050 Hb_031527_030 Hb_031527_030 Hb_012055_040--Hb_031527_030 Hb_012055_040--Hb_005215_010 Hb_004410_120 Hb_004410_120 Hb_012055_040--Hb_004410_120 Hb_012055_040--Hb_000317_100 Hb_003498_080--Hb_001329_250 Hb_000212_420 Hb_000212_420 Hb_003498_080--Hb_000212_420 Hb_001776_020 Hb_001776_020 Hb_003498_080--Hb_001776_020 Hb_001481_060 Hb_001481_060 Hb_003498_080--Hb_001481_060 Hb_003040_050 Hb_003040_050 Hb_003498_080--Hb_003040_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.72093 12.2957 8.47534 18.8353 7.82259 10.1413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.0544 7.07375 9.52752 11.2907 13.9486

CAGE analysis