Hb_012132_040

Information

Type -
Description -
Location Contig12132: 39863-45516
Sequence    

Annotation

kegg
ID vvi:100248036
description eukaryotic translation initiation factor 3 subunit H
nr
ID XP_012067794.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
swissprot
ID Q9C5Z2
description Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=1 SV=2
trembl
ID A0A067L9Z1
description Eukaryotic translation initiation factor 3 subunit H OS=Jatropha curcas GN=JCGZ_15722 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit h

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06536: 39964-45595
cDNA
(Sanger)
(ID:Location)		 019_D17.ab1: 45031-45592 , 024_F03.ab1: 43318-45462 , 035_B11.ab1: 43636-45595 , 052_A09.ab1: 43620-45497

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012132_040 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
2 Hb_007668_040 0.0640937984 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
3 Hb_001341_050 0.0892444224 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
4 Hb_000364_060 0.0927423065 - - JHL03K20.4 [Jatropha curcas]
5 Hb_002942_080 0.0934649474 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
6 Hb_003581_020 0.0938460011 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
7 Hb_032496_030 0.0947823061 - - PREDICTED: WEB family protein At3g02930, chloroplastic [Jatropha curcas]
8 Hb_004198_010 0.0997487931 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
9 Hb_041392_010 0.1062366399 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
10 Hb_024990_010 0.1084458529 - - PREDICTED: la protein 1 [Jatropha curcas]
11 Hb_000199_080 0.1088981708 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001616_090 0.1093480146 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
13 Hb_003044_100 0.1099332572 - - hypothetical protein F383_08446 [Gossypium arboreum]
14 Hb_007643_050 0.110561513 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_003006_060 0.1123013476 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
16 Hb_001766_150 0.1129397502 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
17 Hb_009222_010 0.1133273271 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_002157_190 0.1160204274 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
19 Hb_000156_140 0.1169873262 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
20 Hb_007668_020 0.1171330806 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]

Gene co-expression network

sample Hb_012132_040 Hb_012132_040 Hb_007668_040 Hb_007668_040 Hb_012132_040--Hb_007668_040 Hb_001341_050 Hb_001341_050 Hb_012132_040--Hb_001341_050 Hb_000364_060 Hb_000364_060 Hb_012132_040--Hb_000364_060 Hb_002942_080 Hb_002942_080 Hb_012132_040--Hb_002942_080 Hb_003581_020 Hb_003581_020 Hb_012132_040--Hb_003581_020 Hb_032496_030 Hb_032496_030 Hb_012132_040--Hb_032496_030 Hb_007668_040--Hb_002942_080 Hb_007668_040--Hb_000364_060 Hb_007668_040--Hb_001341_050 Hb_024990_010 Hb_024990_010 Hb_007668_040--Hb_024990_010 Hb_003006_060 Hb_003006_060 Hb_007668_040--Hb_003006_060 Hb_001341_050--Hb_000364_060 Hb_001341_050--Hb_002942_080 Hb_004198_010 Hb_004198_010 Hb_001341_050--Hb_004198_010 Hb_003434_060 Hb_003434_060 Hb_001341_050--Hb_003434_060 Hb_010423_020 Hb_010423_020 Hb_001341_050--Hb_010423_020 Hb_002272_180 Hb_002272_180 Hb_000364_060--Hb_002272_180 Hb_002174_060 Hb_002174_060 Hb_000364_060--Hb_002174_060 Hb_000364_060--Hb_004198_010 Hb_004450_010 Hb_004450_010 Hb_000364_060--Hb_004450_010 Hb_009913_050 Hb_009913_050 Hb_002942_080--Hb_009913_050 Hb_002942_080--Hb_003006_060 Hb_002675_060 Hb_002675_060 Hb_002942_080--Hb_002675_060 Hb_005214_060 Hb_005214_060 Hb_002942_080--Hb_005214_060 Hb_002942_080--Hb_024990_010 Hb_007668_020 Hb_007668_020 Hb_003581_020--Hb_007668_020 Hb_003716_020 Hb_003716_020 Hb_003581_020--Hb_003716_020 Hb_083043_010 Hb_083043_010 Hb_003581_020--Hb_083043_010 Hb_003581_020--Hb_007668_040 Hb_004881_050 Hb_004881_050 Hb_003581_020--Hb_004881_050 Hb_000372_040 Hb_000372_040 Hb_003581_020--Hb_000372_040 Hb_041392_010 Hb_041392_010 Hb_032496_030--Hb_041392_010 Hb_004241_040 Hb_004241_040 Hb_032496_030--Hb_004241_040 Hb_032496_030--Hb_001341_050 Hb_005054_070 Hb_005054_070 Hb_032496_030--Hb_005054_070 Hb_005784_080 Hb_005784_080 Hb_032496_030--Hb_005784_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.4182 16.0673 30.6644 23.1778 61.3504 108.754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.3922 32.0367 13.7474 23.0554 12.1829

CAGE analysis