Hb_012135_010

Information

Type -
Description -
Location Contig12135: 11281-14966
Sequence    

Annotation

kegg
ID bvg:104897193
description uncharacterized LOC104897193
nr
ID XP_012487705.1
description PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061DN66
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003365 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012135_010 0.0 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
2 Hb_133311_010 0.1569685683 - - PREDICTED: U-box domain-containing protein 62-like isoform X1 [Glycine max]
3 Hb_007333_010 0.2164076594 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_002045_140 0.2198647657 - - histone acetyltransferase, partial [Triticum aestivum]
5 Hb_098546_010 0.2310399802 - - thioredoxin-like family protein [Hevea brasiliensis]
6 Hb_008667_040 0.2398344692 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
7 Hb_000264_290 0.2514427989 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
8 Hb_163599_010 0.2622073212 - - hypothetical protein RCOM_1579620 [Ricinus communis]
9 Hb_012532_030 0.2682581186 - - -
10 Hb_078604_010 0.2715157029 - - -
11 Hb_000731_230 0.2731381192 - - PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]
12 Hb_082407_010 0.2740429897 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
13 Hb_156526_010 0.2819735099 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
14 Hb_005511_100 0.2832890537 - - PREDICTED: uncharacterized protein LOC105645493 isoform X1 [Jatropha curcas]
15 Hb_000179_150 0.2839835045 - - hypothetical protein ZEAMMB73_153699 [Zea mays]
16 Hb_149714_010 0.2841469236 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
17 Hb_164255_010 0.2872449527 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
18 Hb_001277_210 0.2876048857 - - -
19 Hb_114839_010 0.2884193647 - - -
20 Hb_036790_090 0.2891650544 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012135_010 Hb_012135_010 Hb_133311_010 Hb_133311_010 Hb_012135_010--Hb_133311_010 Hb_007333_010 Hb_007333_010 Hb_012135_010--Hb_007333_010 Hb_002045_140 Hb_002045_140 Hb_012135_010--Hb_002045_140 Hb_098546_010 Hb_098546_010 Hb_012135_010--Hb_098546_010 Hb_008667_040 Hb_008667_040 Hb_012135_010--Hb_008667_040 Hb_000264_290 Hb_000264_290 Hb_012135_010--Hb_000264_290 Hb_133311_010--Hb_008667_040 Hb_000179_150 Hb_000179_150 Hb_133311_010--Hb_000179_150 Hb_133311_010--Hb_007333_010 Hb_133311_010--Hb_002045_140 Hb_133311_010--Hb_000264_290 Hb_082407_010 Hb_082407_010 Hb_007333_010--Hb_082407_010 Hb_000268_010 Hb_000268_010 Hb_007333_010--Hb_000268_010 Hb_007123_060 Hb_007123_060 Hb_007333_010--Hb_007123_060 Hb_008442_010 Hb_008442_010 Hb_007333_010--Hb_008442_010 Hb_007333_010--Hb_000264_290 Hb_002045_140--Hb_008667_040 Hb_156526_010 Hb_156526_010 Hb_002045_140--Hb_156526_010 Hb_003073_050 Hb_003073_050 Hb_002045_140--Hb_003073_050 Hb_002045_140--Hb_098546_010 Hb_002045_140--Hb_082407_010 Hb_136765_010 Hb_136765_010 Hb_002045_140--Hb_136765_010 Hb_098546_010--Hb_000268_010 Hb_098546_010--Hb_082407_010 Hb_005511_100 Hb_005511_100 Hb_098546_010--Hb_005511_100 Hb_006698_050 Hb_006698_050 Hb_098546_010--Hb_006698_050 Hb_098546_010--Hb_007333_010 Hb_008667_040--Hb_000264_290 Hb_100105_010 Hb_100105_010 Hb_008667_040--Hb_100105_010 Hb_010068_100 Hb_010068_100 Hb_008667_040--Hb_010068_100 Hb_008667_040--Hb_007123_060 Hb_000302_130 Hb_000302_130 Hb_000264_290--Hb_000302_130 Hb_000264_290--Hb_007123_060 Hb_012120_030 Hb_012120_030 Hb_000264_290--Hb_012120_030 Hb_188209_010 Hb_188209_010 Hb_000264_290--Hb_188209_010 Hb_149714_010 Hb_149714_010 Hb_000264_290--Hb_149714_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00778815 0.0141275 0.0118477 0.00587616 0 0.0214558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0176761 0.0278182 0 0 0

CAGE analysis