Hb_012146_040

Information

Type -
Description -
Location Contig12146: 34353-45355
Sequence    

Annotation

kegg
ID rcu:RCOM_0562380
description GABA-specific permease, putative
nr
ID XP_012078314.1
description PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
swissprot
ID B9EXZ6
description Amino-acid permease BAT1 homolog OS=Oryza sativa subsp. japonica GN=BAT1 PE=2 SV=1
trembl
ID E6NU75
description JMS09K11.3 protein OS=Jatropha curcas GN=JMS09K11.3 PE=4 SV=1
Gene Ontology
ID GO:0016020
description amino-acid permease bat1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012146_040 0.0 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
2 Hb_114988_010 0.2892031761 - - -
3 Hb_035662_010 0.2997069946 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000230_040 0.3089342328 - - PREDICTED: protein MON2 homolog isoform X2 [Vitis vinifera]
5 Hb_000109_030 0.3120366628 - - -
6 Hb_009780_090 0.3160512224 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
7 Hb_002151_080 0.3222281273 - - hypothetical protein MIMGU_mgv1a000572mg [Erythranthe guttata]
8 Hb_056506_060 0.3228683499 - - hypothetical protein B456_007G294000 [Gossypium raimondii]
9 Hb_067466_010 0.3248168923 - - ankyrin repeat protein [Bruguiera gymnorhiza]
10 Hb_001014_130 0.3251431732 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
11 Hb_004361_050 0.3278837245 - - ring finger containing protein, putative [Ricinus communis]
12 Hb_083569_010 0.3290523824 - - -
13 Hb_002299_050 0.3321310264 - - PREDICTED: chalcone--flavonone isomerase isoform X1 [Pyrus x bretschneideri]
14 Hb_178884_010 0.3323820427 - - putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
15 Hb_005389_110 0.3337862365 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
16 Hb_013394_020 0.3341034451 - - PREDICTED: putative laccase-9 [Vitis vinifera]
17 Hb_039894_010 0.3341051347 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_002893_020 0.334987424 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
19 Hb_003929_060 0.3350081015 - - PREDICTED: uncharacterized protein ECU03_1610 [Jatropha curcas]
20 Hb_000115_310 0.3350888484 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_012146_040 Hb_012146_040 Hb_114988_010 Hb_114988_010 Hb_012146_040--Hb_114988_010 Hb_035662_010 Hb_035662_010 Hb_012146_040--Hb_035662_010 Hb_000230_040 Hb_000230_040 Hb_012146_040--Hb_000230_040 Hb_000109_030 Hb_000109_030 Hb_012146_040--Hb_000109_030 Hb_009780_090 Hb_009780_090 Hb_012146_040--Hb_009780_090 Hb_002151_080 Hb_002151_080 Hb_012146_040--Hb_002151_080 Hb_155720_010 Hb_155720_010 Hb_114988_010--Hb_155720_010 Hb_040290_010 Hb_040290_010 Hb_114988_010--Hb_040290_010 Hb_004687_010 Hb_004687_010 Hb_114988_010--Hb_004687_010 Hb_011537_070 Hb_011537_070 Hb_114988_010--Hb_011537_070 Hb_003725_050 Hb_003725_050 Hb_114988_010--Hb_003725_050 Hb_000928_150 Hb_000928_150 Hb_035662_010--Hb_000928_150 Hb_001677_050 Hb_001677_050 Hb_035662_010--Hb_001677_050 Hb_000056_230 Hb_000056_230 Hb_035662_010--Hb_000056_230 Hb_114984_010 Hb_114984_010 Hb_035662_010--Hb_114984_010 Hb_001632_010 Hb_001632_010 Hb_035662_010--Hb_001632_010 Hb_010531_050 Hb_010531_050 Hb_035662_010--Hb_010531_050 Hb_003061_010 Hb_003061_010 Hb_000230_040--Hb_003061_010 Hb_000230_040--Hb_002151_080 Hb_000088_020 Hb_000088_020 Hb_000230_040--Hb_000088_020 Hb_002253_040 Hb_002253_040 Hb_000230_040--Hb_002253_040 Hb_000785_080 Hb_000785_080 Hb_000230_040--Hb_000785_080 Hb_170487_010 Hb_170487_010 Hb_000230_040--Hb_170487_010 Hb_002141_040 Hb_002141_040 Hb_000109_030--Hb_002141_040 Hb_032631_040 Hb_032631_040 Hb_000109_030--Hb_032631_040 Hb_002762_130 Hb_002762_130 Hb_000109_030--Hb_002762_130 Hb_000236_080 Hb_000236_080 Hb_000109_030--Hb_000236_080 Hb_003656_180 Hb_003656_180 Hb_000109_030--Hb_003656_180 Hb_009476_040 Hb_009476_040 Hb_000109_030--Hb_009476_040 Hb_003311_050 Hb_003311_050 Hb_009780_090--Hb_003311_050 Hb_009780_090--Hb_000928_150 Hb_083569_010 Hb_083569_010 Hb_009780_090--Hb_083569_010 Hb_094101_010 Hb_094101_010 Hb_009780_090--Hb_094101_010 Hb_010874_030 Hb_010874_030 Hb_009780_090--Hb_010874_030 Hb_021583_010 Hb_021583_010 Hb_009780_090--Hb_021583_010 Hb_000032_060 Hb_000032_060 Hb_002151_080--Hb_000032_060 Hb_002151_080--Hb_000088_020 Hb_000523_090 Hb_000523_090 Hb_002151_080--Hb_000523_090 Hb_000181_180 Hb_000181_180 Hb_002151_080--Hb_000181_180 Hb_002151_080--Hb_003061_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.158874 0.0219513 0 0.0283403 0.0572361 0.129362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0863509 0 0.120463 0.0453629

CAGE analysis