Hb_012150_030

Information

Type -
Description -
Location Contig12150: 20950-29623
Sequence    

Annotation

kegg
ID rcu:RCOM_1382380
description aspartyl-tRNA synthetase, putative (EC:6.1.1.12)
nr
ID XP_012072776.1
description PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
swissprot
ID Q112K0
description Aspartate--tRNA(Asp/Asn) ligase OS=Trichodesmium erythraeum (strain IMS101) GN=aspS PE=3 SV=1
trembl
ID A0A067KNA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06970 PE=3 SV=1
Gene Ontology
ID GO:0005737
description aspartate--trna mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06573: 20956-22470 , PASA_asmbl_06574: 23088-25890 , PASA_asmbl_06575: 26473-28848 , PASA_asmbl_06576: 26698-27177 , PASA_asmbl_06577: 29141-29264 , PASA_asmbl_06578: 29401-29509
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012150_030 0.0 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
2 Hb_003053_110 0.0419142475 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
3 Hb_004452_120 0.0513754005 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
4 Hb_010863_050 0.0557195508 - - OTU domain-containing protein 6B, putative [Ricinus communis]
5 Hb_134849_010 0.0611060187 - - ATP synthase subunit d, putative [Ricinus communis]
6 Hb_048093_010 0.0632649394 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
7 Hb_000941_100 0.0648816124 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
8 Hb_000212_440 0.0763986163 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_007741_110 0.0766128856 - - -
10 Hb_021374_030 0.0770476821 - - hypothetical protein RCOM_0351490 [Ricinus communis]
11 Hb_008705_020 0.0770781636 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
12 Hb_000364_050 0.0774674501 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
13 Hb_002078_340 0.0788698948 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
14 Hb_000167_110 0.079089317 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
15 Hb_002774_190 0.0797442399 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
16 Hb_000212_230 0.0819884809 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
17 Hb_000061_180 0.0827759992 - - exonuclease, putative [Ricinus communis]
18 Hb_073973_090 0.0832389711 - - Aminotransferase ybdL, putative [Ricinus communis]
19 Hb_001195_450 0.0838599784 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
20 Hb_001195_770 0.0848702076 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]

Gene co-expression network

sample Hb_012150_030 Hb_012150_030 Hb_003053_110 Hb_003053_110 Hb_012150_030--Hb_003053_110 Hb_004452_120 Hb_004452_120 Hb_012150_030--Hb_004452_120 Hb_010863_050 Hb_010863_050 Hb_012150_030--Hb_010863_050 Hb_134849_010 Hb_134849_010 Hb_012150_030--Hb_134849_010 Hb_048093_010 Hb_048093_010 Hb_012150_030--Hb_048093_010 Hb_000941_100 Hb_000941_100 Hb_012150_030--Hb_000941_100 Hb_003053_110--Hb_000941_100 Hb_008705_020 Hb_008705_020 Hb_003053_110--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_003053_110--Hb_001195_770 Hb_007741_110 Hb_007741_110 Hb_003053_110--Hb_007741_110 Hb_003053_110--Hb_134849_010 Hb_004452_120--Hb_010863_050 Hb_133702_010 Hb_133702_010 Hb_004452_120--Hb_133702_010 Hb_000364_050 Hb_000364_050 Hb_004452_120--Hb_000364_050 Hb_000061_180 Hb_000061_180 Hb_004452_120--Hb_000061_180 Hb_035273_020 Hb_035273_020 Hb_004452_120--Hb_035273_020 Hb_000304_070 Hb_000304_070 Hb_010863_050--Hb_000304_070 Hb_000212_230 Hb_000212_230 Hb_010863_050--Hb_000212_230 Hb_002675_250 Hb_002675_250 Hb_010863_050--Hb_002675_250 Hb_010863_050--Hb_035273_020 Hb_000032_500 Hb_000032_500 Hb_134849_010--Hb_000032_500 Hb_002774_190 Hb_002774_190 Hb_134849_010--Hb_002774_190 Hb_033312_010 Hb_033312_010 Hb_134849_010--Hb_033312_010 Hb_134849_010--Hb_048093_010 Hb_048093_010--Hb_000941_100 Hb_048093_010--Hb_003053_110 Hb_156850_100 Hb_156850_100 Hb_048093_010--Hb_156850_100 Hb_000291_180 Hb_000291_180 Hb_048093_010--Hb_000291_180 Hb_000941_100--Hb_001195_770 Hb_006907_060 Hb_006907_060 Hb_000941_100--Hb_006907_060 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.82839 3.43471 7.70457 6.04869 2.82597 3.53076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.03502 4.60758 3.68863 4.75663 11.2469

CAGE analysis