Hb_012150_050

Information

Type -
Description -
Location Contig12150: 41973-42683
Sequence    

Annotation

kegg
ID rcu:RCOM_1382640
description protein binding protein, putative
nr
ID XP_002522096.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7Y0
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1382640 PE=4 SV=1
Gene Ontology
ID GO:0047134
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012150_050 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_187459_010 0.1990130728 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
3 Hb_057486_010 0.2192437595 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
4 Hb_002204_040 0.2497758924 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
5 Hb_001762_070 0.2593427372 - - -
6 Hb_000589_320 0.2652362391 - - unnamed protein product [Vitis vinifera]
7 Hb_000696_320 0.269721314 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
8 Hb_106873_010 0.271511063 - - -
9 Hb_002023_040 0.2734988981 - - -
10 Hb_000907_040 0.2774846638 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_000833_080 0.2778473549 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
12 Hb_000094_060 0.2825842186 - - -
13 Hb_001125_020 0.2831896905 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
14 Hb_005839_010 0.2848884589 - - 30S ribosomal protein s13 [Camellia sinensis]
15 Hb_000252_230 0.287577675 - - hypothetical protein B456_008G160800 [Gossypium raimondii]
16 Hb_000962_010 0.2890427722 - - -
17 Hb_032419_020 0.2914109383 - - PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
18 Hb_001907_090 0.2952012985 - - -
19 Hb_032531_040 0.297220026 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
20 Hb_000809_150 0.29853219 - - -

Gene co-expression network

sample Hb_012150_050 Hb_012150_050 Hb_187459_010 Hb_187459_010 Hb_012150_050--Hb_187459_010 Hb_057486_010 Hb_057486_010 Hb_012150_050--Hb_057486_010 Hb_002204_040 Hb_002204_040 Hb_012150_050--Hb_002204_040 Hb_001762_070 Hb_001762_070 Hb_012150_050--Hb_001762_070 Hb_000589_320 Hb_000589_320 Hb_012150_050--Hb_000589_320 Hb_000696_320 Hb_000696_320 Hb_012150_050--Hb_000696_320 Hb_032531_040 Hb_032531_040 Hb_187459_010--Hb_032531_040 Hb_001579_040 Hb_001579_040 Hb_187459_010--Hb_001579_040 Hb_059952_010 Hb_059952_010 Hb_187459_010--Hb_059952_010 Hb_001454_110 Hb_001454_110 Hb_187459_010--Hb_001454_110 Hb_001907_090 Hb_001907_090 Hb_187459_010--Hb_001907_090 Hb_001623_440 Hb_001623_440 Hb_057486_010--Hb_001623_440 Hb_000833_080 Hb_000833_080 Hb_057486_010--Hb_000833_080 Hb_057486_010--Hb_000696_320 Hb_043950_010 Hb_043950_010 Hb_057486_010--Hb_043950_010 Hb_173423_010 Hb_173423_010 Hb_057486_010--Hb_173423_010 Hb_000291_130 Hb_000291_130 Hb_002204_040--Hb_000291_130 Hb_005839_010 Hb_005839_010 Hb_002204_040--Hb_005839_010 Hb_079978_010 Hb_079978_010 Hb_002204_040--Hb_079978_010 Hb_106873_010 Hb_106873_010 Hb_002204_040--Hb_106873_010 Hb_001385_080 Hb_001385_080 Hb_002204_040--Hb_001385_080 Hb_122567_020 Hb_122567_020 Hb_002204_040--Hb_122567_020 Hb_001385_050 Hb_001385_050 Hb_001762_070--Hb_001385_050 Hb_022593_060 Hb_022593_060 Hb_001762_070--Hb_022593_060 Hb_010024_010 Hb_010024_010 Hb_001762_070--Hb_010024_010 Hb_001206_070 Hb_001206_070 Hb_001762_070--Hb_001206_070 Hb_000962_010 Hb_000962_010 Hb_001762_070--Hb_000962_010 Hb_001241_060 Hb_001241_060 Hb_001762_070--Hb_001241_060 Hb_000589_320--Hb_106873_010 Hb_000589_320--Hb_001454_110 Hb_000589_320--Hb_032531_040 Hb_000589_320--Hb_005839_010 Hb_042026_010 Hb_042026_010 Hb_000589_320--Hb_042026_010 Hb_000589_320--Hb_000962_010 Hb_000696_320--Hb_000833_080 Hb_000696_320--Hb_043950_010 Hb_001125_020 Hb_001125_020 Hb_000696_320--Hb_001125_020 Hb_000696_320--Hb_173423_010 Hb_007545_160 Hb_007545_160 Hb_000696_320--Hb_007545_160 Hb_000580_040 Hb_000580_040 Hb_000696_320--Hb_000580_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0577446 0.0550194 0.0672137 0 0.760317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis