Hb_012150_070

Information

Type -
Description -
Location Contig12150: 53583-58303
Sequence    

Annotation

kegg
ID rcu:RCOM_1382630
description hypothetical protein
nr
ID KDP38827.1
description hypothetical protein JCGZ_04984 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067KRT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04984 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance protein rps6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012150_070 0.0 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
2 Hb_002609_100 0.12053347 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
3 Hb_002026_230 0.1254158815 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
4 Hb_000018_160 0.1430428341 - - nitrate transporter, putative [Ricinus communis]
5 Hb_005568_070 0.1547554472 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
6 Hb_000580_060 0.1699982222 - - PREDICTED: uncharacterized protein LOC105643127 [Jatropha curcas]
7 Hb_004307_040 0.1796914503 - - -
8 Hb_000211_080 0.1808863465 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
9 Hb_000329_540 0.1857676177 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
10 Hb_000352_130 0.187239124 - - hypothetical protein CISIN_1g0419111mg, partial [Citrus sinensis]
11 Hb_000753_210 0.1883317133 - - l-asparaginase, putative [Ricinus communis]
12 Hb_000836_050 0.188495501 - - -
13 Hb_010290_020 0.1902650168 - - RAB6-interacting protein, putative [Ricinus communis]
14 Hb_007634_020 0.1922517288 - - -
15 Hb_007382_040 0.1954453899 - - uncharacterized LOC105644857 [Jatropha curcas]
16 Hb_004206_040 0.1993122501 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000613_020 0.1995049407 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
18 Hb_000792_110 0.1998557896 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
19 Hb_003050_090 0.2026381133 - - lupus la ribonucleoprotein, putative [Ricinus communis]
20 Hb_060437_010 0.2035069945 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]

Gene co-expression network

sample Hb_012150_070 Hb_012150_070 Hb_002609_100 Hb_002609_100 Hb_012150_070--Hb_002609_100 Hb_002026_230 Hb_002026_230 Hb_012150_070--Hb_002026_230 Hb_000018_160 Hb_000018_160 Hb_012150_070--Hb_000018_160 Hb_005568_070 Hb_005568_070 Hb_012150_070--Hb_005568_070 Hb_000580_060 Hb_000580_060 Hb_012150_070--Hb_000580_060 Hb_004307_040 Hb_004307_040 Hb_012150_070--Hb_004307_040 Hb_002609_100--Hb_002026_230 Hb_007382_040 Hb_007382_040 Hb_002609_100--Hb_007382_040 Hb_000613_020 Hb_000613_020 Hb_002609_100--Hb_000613_020 Hb_030414_050 Hb_030414_050 Hb_002609_100--Hb_030414_050 Hb_003050_090 Hb_003050_090 Hb_002609_100--Hb_003050_090 Hb_000836_050 Hb_000836_050 Hb_002026_230--Hb_000836_050 Hb_007634_020 Hb_007634_020 Hb_002026_230--Hb_007634_020 Hb_002026_230--Hb_005568_070 Hb_002026_230--Hb_000018_160 Hb_000211_080 Hb_000211_080 Hb_000018_160--Hb_000211_080 Hb_035360_010 Hb_035360_010 Hb_000018_160--Hb_035360_010 Hb_000018_160--Hb_005568_070 Hb_000619_070 Hb_000619_070 Hb_000018_160--Hb_000619_070 Hb_000544_120 Hb_000544_120 Hb_000018_160--Hb_000544_120 Hb_000161_100 Hb_000161_100 Hb_000018_160--Hb_000161_100 Hb_031862_170 Hb_031862_170 Hb_005568_070--Hb_031862_170 Hb_005568_070--Hb_000211_080 Hb_000329_540 Hb_000329_540 Hb_005568_070--Hb_000329_540 Hb_004102_130 Hb_004102_130 Hb_005568_070--Hb_004102_130 Hb_003540_140 Hb_003540_140 Hb_005568_070--Hb_003540_140 Hb_010290_020 Hb_010290_020 Hb_000580_060--Hb_010290_020 Hb_000441_230 Hb_000441_230 Hb_000580_060--Hb_000441_230 Hb_000580_060--Hb_004307_040 Hb_000454_030 Hb_000454_030 Hb_000580_060--Hb_000454_030 Hb_003360_020 Hb_003360_020 Hb_000580_060--Hb_003360_020 Hb_000580_060--Hb_005568_070 Hb_004307_040--Hb_010290_020 Hb_004307_040--Hb_005568_070 Hb_027998_030 Hb_027998_030 Hb_004307_040--Hb_027998_030 Hb_004307_040--Hb_003540_140 Hb_004307_040--Hb_000329_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71388 0.425422 0.00892519 0 1.42832 1.43966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.24595 0.0430016 0.202822 0.017139 0

CAGE analysis