Hb_012180_030

Information

Type -
Description -
Location Contig12180: 21637-23818
Sequence    

Annotation

kegg
ID mdm:103400380
description uncharacterized LOC103400380
nr
ID CBI40923.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID K7MLQ0
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0003723
description trna rrna methyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06620: 19071-21874 , PASA_asmbl_06621: 21953-22843 , PASA_asmbl_06622: 23748-30853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012180_030 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000136_060 0.1118458554 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
3 Hb_012180_040 0.1234467932 - - hypothetical protein VITISV_042517 [Vitis vinifera]
4 Hb_000158_100 0.1373877174 - - conserved hypothetical protein [Ricinus communis]
5 Hb_028912_040 0.1386023041 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
6 Hb_002092_090 0.1392606504 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
7 Hb_172970_010 0.1397447406 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
8 Hb_002028_170 0.1399998432 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
9 Hb_000136_040 0.1455734665 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
10 Hb_000743_050 0.1500397428 - - unnamed protein product [Vitis vinifera]
11 Hb_011716_020 0.1525483319 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
12 Hb_002600_140 0.1555972993 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
13 Hb_000470_080 0.1561587643 - - Caldesmon, putative [Ricinus communis]
14 Hb_003916_010 0.1576878608 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
15 Hb_003623_030 0.1579683616 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
16 Hb_001780_090 0.1591635145 - - PREDICTED: uncharacterized protein LOC105631099 isoform X1 [Jatropha curcas]
17 Hb_006663_070 0.159825622 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
18 Hb_001977_010 0.1605037868 - - PREDICTED: uncharacterized protein LOC105636485 isoform X2 [Jatropha curcas]
19 Hb_002974_060 0.1621613397 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
20 Hb_032631_040 0.1645890321 - - PREDICTED: uncharacterized protein LOC105638769 [Jatropha curcas]

Gene co-expression network

sample Hb_012180_030 Hb_012180_030 Hb_000136_060 Hb_000136_060 Hb_012180_030--Hb_000136_060 Hb_012180_040 Hb_012180_040 Hb_012180_030--Hb_012180_040 Hb_000158_100 Hb_000158_100 Hb_012180_030--Hb_000158_100 Hb_028912_040 Hb_028912_040 Hb_012180_030--Hb_028912_040 Hb_002092_090 Hb_002092_090 Hb_012180_030--Hb_002092_090 Hb_172970_010 Hb_172970_010 Hb_012180_030--Hb_172970_010 Hb_000136_060--Hb_000158_100 Hb_002028_170 Hb_002028_170 Hb_000136_060--Hb_002028_170 Hb_003623_030 Hb_003623_030 Hb_000136_060--Hb_003623_030 Hb_011716_020 Hb_011716_020 Hb_000136_060--Hb_011716_020 Hb_000743_050 Hb_000743_050 Hb_000136_060--Hb_000743_050 Hb_001900_110 Hb_001900_110 Hb_000136_060--Hb_001900_110 Hb_006663_070 Hb_006663_070 Hb_012180_040--Hb_006663_070 Hb_012180_040--Hb_002092_090 Hb_012180_040--Hb_000158_100 Hb_012180_040--Hb_000136_060 Hb_058702_010 Hb_058702_010 Hb_012180_040--Hb_058702_010 Hb_000158_100--Hb_000743_050 Hb_000158_100--Hb_003623_030 Hb_000158_100--Hb_002028_170 Hb_000739_220 Hb_000739_220 Hb_000158_100--Hb_000739_220 Hb_000158_100--Hb_001900_110 Hb_127552_060 Hb_127552_060 Hb_028912_040--Hb_127552_060 Hb_002600_140 Hb_002600_140 Hb_028912_040--Hb_002600_140 Hb_004224_020 Hb_004224_020 Hb_028912_040--Hb_004224_020 Hb_187953_010 Hb_187953_010 Hb_028912_040--Hb_187953_010 Hb_007026_040 Hb_007026_040 Hb_028912_040--Hb_007026_040 Hb_000470_080 Hb_000470_080 Hb_028912_040--Hb_000470_080 Hb_002092_090--Hb_006663_070 Hb_025012_010 Hb_025012_010 Hb_002092_090--Hb_025012_010 Hb_042487_010 Hb_042487_010 Hb_002092_090--Hb_042487_010 Hb_003711_040 Hb_003711_040 Hb_002092_090--Hb_003711_040 Hb_001943_010 Hb_001943_010 Hb_002092_090--Hb_001943_010 Hb_002419_030 Hb_002419_030 Hb_172970_010--Hb_002419_030 Hb_004448_090 Hb_004448_090 Hb_172970_010--Hb_004448_090 Hb_000959_090 Hb_000959_090 Hb_172970_010--Hb_000959_090 Hb_002141_040 Hb_002141_040 Hb_172970_010--Hb_002141_040 Hb_172970_010--Hb_012180_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20508 1.32138 0.127623 1.01087 1.54835 5.12118
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.887569 0.375978 1.006 2.84387 1.56782

CAGE analysis