Hb_012180_040

Information

Type -
Description -
Location Contig12180: 30587-32320
Sequence    

Annotation

kegg
ID atr:s00002p00162270
description AMTR_s00002p00162270; hypothetical protein
nr
ID CAN63021.1
description hypothetical protein VITISV_042517 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B0I9
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042517 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06622: 23748-30853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012180_040 0.0 - - hypothetical protein VITISV_042517 [Vitis vinifera]
2 Hb_006663_070 0.1090640591 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
3 Hb_002092_090 0.1210176448 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
4 Hb_000158_100 0.1212864615 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000136_060 0.1233252536 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
6 Hb_012180_030 0.1234467932 - - unnamed protein product [Vitis vinifera]
7 Hb_058702_010 0.1320491855 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
8 Hb_000743_050 0.1320818655 - - unnamed protein product [Vitis vinifera]
9 Hb_003916_010 0.1365758218 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
10 Hb_000160_220 0.1419377014 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
11 Hb_002601_130 0.1425633148 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
12 Hb_028912_040 0.1439412505 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]
13 Hb_002551_070 0.1446316607 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
14 Hb_102269_010 0.1449515209 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
15 Hb_002815_060 0.1453037182 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
16 Hb_003623_030 0.1463347331 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
17 Hb_054586_020 0.1478351211 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
18 Hb_002742_070 0.1479923324 - - PREDICTED: villin-4-like [Jatropha curcas]
19 Hb_032631_040 0.1483217302 - - PREDICTED: uncharacterized protein LOC105638769 [Jatropha curcas]
20 Hb_081879_030 0.1484702429 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_012180_040 Hb_012180_040 Hb_006663_070 Hb_006663_070 Hb_012180_040--Hb_006663_070 Hb_002092_090 Hb_002092_090 Hb_012180_040--Hb_002092_090 Hb_000158_100 Hb_000158_100 Hb_012180_040--Hb_000158_100 Hb_000136_060 Hb_000136_060 Hb_012180_040--Hb_000136_060 Hb_012180_030 Hb_012180_030 Hb_012180_040--Hb_012180_030 Hb_058702_010 Hb_058702_010 Hb_012180_040--Hb_058702_010 Hb_000679_150 Hb_000679_150 Hb_006663_070--Hb_000679_150 Hb_002601_130 Hb_002601_130 Hb_006663_070--Hb_002601_130 Hb_006663_070--Hb_002092_090 Hb_004619_050 Hb_004619_050 Hb_006663_070--Hb_004619_050 Hb_032458_010 Hb_032458_010 Hb_006663_070--Hb_032458_010 Hb_005679_050 Hb_005679_050 Hb_006663_070--Hb_005679_050 Hb_025012_010 Hb_025012_010 Hb_002092_090--Hb_025012_010 Hb_042487_010 Hb_042487_010 Hb_002092_090--Hb_042487_010 Hb_003711_040 Hb_003711_040 Hb_002092_090--Hb_003711_040 Hb_001943_010 Hb_001943_010 Hb_002092_090--Hb_001943_010 Hb_000743_050 Hb_000743_050 Hb_000158_100--Hb_000743_050 Hb_003623_030 Hb_003623_030 Hb_000158_100--Hb_003623_030 Hb_000158_100--Hb_000136_060 Hb_002028_170 Hb_002028_170 Hb_000158_100--Hb_002028_170 Hb_000739_220 Hb_000739_220 Hb_000158_100--Hb_000739_220 Hb_001900_110 Hb_001900_110 Hb_000158_100--Hb_001900_110 Hb_000136_060--Hb_002028_170 Hb_000136_060--Hb_003623_030 Hb_011716_020 Hb_011716_020 Hb_000136_060--Hb_011716_020 Hb_000136_060--Hb_000743_050 Hb_000136_060--Hb_001900_110 Hb_012180_030--Hb_000136_060 Hb_012180_030--Hb_000158_100 Hb_028912_040 Hb_028912_040 Hb_012180_030--Hb_028912_040 Hb_012180_030--Hb_002092_090 Hb_172970_010 Hb_172970_010 Hb_012180_030--Hb_172970_010 Hb_000160_220 Hb_000160_220 Hb_058702_010--Hb_000160_220 Hb_102269_010 Hb_102269_010 Hb_058702_010--Hb_102269_010 Hb_005494_020 Hb_005494_020 Hb_058702_010--Hb_005494_020 Hb_002960_160 Hb_002960_160 Hb_058702_010--Hb_002960_160 Hb_002903_080 Hb_002903_080 Hb_058702_010--Hb_002903_080 Hb_002301_260 Hb_002301_260 Hb_058702_010--Hb_002301_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.06104 2.71567 0.809516 1.85762 2.4905 9.81535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52206 0.818705 1.46203 2.61282 2.36861

CAGE analysis