Hb_012181_010

Information

Type -
Description -
Location Contig12181: 5345-9236
Sequence    

Annotation

kegg
ID tcc:TCM_003698
description DNA/RNA polymerases superfamily protein
nr
ID XP_007050046.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q00962
description Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153) GN=ORF V PE=3 SV=1
trembl
ID A0A061DW51
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003698 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012181_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000504_080 0.2665975749 - - -
3 Hb_007007_010 0.2855280997 - - -
4 Hb_004650_080 0.2919189741 - - -
5 Hb_159555_010 0.2990131316 - - PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
6 Hb_000115_070 0.301069461 - - hypothetical protein RCOM_0030010 [Ricinus communis]
7 Hb_000424_160 0.3013508573 - - hypothetical protein POPTR_0006s23570g [Populus trichocarpa]
8 Hb_006960_020 0.3053509943 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
9 Hb_097433_010 0.3058278242 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
10 Hb_006913_090 0.3117043947 - - PREDICTED: uncharacterized protein LOC101215996 [Cucumis sativus]
11 Hb_000345_120 0.3122675733 - - PREDICTED: mediator of RNA polymerase II transcription subunit 37a [Jatropha curcas]
12 Hb_001416_050 0.3194509225 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]
13 Hb_004712_110 0.3199727505 - - 30S ribosomal protein S10, putative [Ricinus communis]
14 Hb_003327_030 0.3206762315 - - Hsc70-interacting protein, putative [Ricinus communis]
15 Hb_029508_010 0.3312720565 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
16 Hb_001329_260 0.3339802889 - - PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]
17 Hb_000161_020 0.3346396263 - - hypothetical protein CICLE_v10003356mg, partial [Citrus clementina]
18 Hb_085375_010 0.3364581036 - - protein with unknown function [Ricinus communis]
19 Hb_002814_120 0.3390279351 - - PREDICTED: uncharacterized protein LOC105633463 [Jatropha curcas]
20 Hb_010521_020 0.3449013158 - - -

Gene co-expression network

sample Hb_012181_010 Hb_012181_010 Hb_000504_080 Hb_000504_080 Hb_012181_010--Hb_000504_080 Hb_007007_010 Hb_007007_010 Hb_012181_010--Hb_007007_010 Hb_004650_080 Hb_004650_080 Hb_012181_010--Hb_004650_080 Hb_159555_010 Hb_159555_010 Hb_012181_010--Hb_159555_010 Hb_000115_070 Hb_000115_070 Hb_012181_010--Hb_000115_070 Hb_000424_160 Hb_000424_160 Hb_012181_010--Hb_000424_160 Hb_097433_010 Hb_097433_010 Hb_000504_080--Hb_097433_010 Hb_003327_030 Hb_003327_030 Hb_000504_080--Hb_003327_030 Hb_002814_120 Hb_002814_120 Hb_000504_080--Hb_002814_120 Hb_000504_080--Hb_004650_080 Hb_000513_070 Hb_000513_070 Hb_000504_080--Hb_000513_070 Hb_007007_010--Hb_004650_080 Hb_099698_010 Hb_099698_010 Hb_007007_010--Hb_099698_010 Hb_005460_030 Hb_005460_030 Hb_007007_010--Hb_005460_030 Hb_006076_020 Hb_006076_020 Hb_007007_010--Hb_006076_020 Hb_000040_050 Hb_000040_050 Hb_007007_010--Hb_000040_050 Hb_001329_260 Hb_001329_260 Hb_004650_080--Hb_001329_260 Hb_004097_020 Hb_004097_020 Hb_004650_080--Hb_004097_020 Hb_003768_040 Hb_003768_040 Hb_004650_080--Hb_003768_040 Hb_001946_360 Hb_001946_360 Hb_004650_080--Hb_001946_360 Hb_168978_040 Hb_168978_040 Hb_004650_080--Hb_168978_040 Hb_004650_080--Hb_097433_010 Hb_010317_020 Hb_010317_020 Hb_159555_010--Hb_010317_020 Hb_009973_020 Hb_009973_020 Hb_159555_010--Hb_009973_020 Hb_005081_040 Hb_005081_040 Hb_159555_010--Hb_005081_040 Hb_049483_010 Hb_049483_010 Hb_159555_010--Hb_049483_010 Hb_023323_010 Hb_023323_010 Hb_159555_010--Hb_023323_010 Hb_002783_020 Hb_002783_020 Hb_000115_070--Hb_002783_020 Hb_149838_010 Hb_149838_010 Hb_000115_070--Hb_149838_010 Hb_002596_030 Hb_002596_030 Hb_000115_070--Hb_002596_030 Hb_000260_140 Hb_000260_140 Hb_000115_070--Hb_000260_140 Hb_000028_640 Hb_000028_640 Hb_000115_070--Hb_000028_640 Hb_004176_060 Hb_004176_060 Hb_000115_070--Hb_004176_060 Hb_000318_260 Hb_000318_260 Hb_000424_160--Hb_000318_260 Hb_085375_010 Hb_085375_010 Hb_000424_160--Hb_085375_010 Hb_000976_180 Hb_000976_180 Hb_000424_160--Hb_000976_180 Hb_000345_120 Hb_000345_120 Hb_000424_160--Hb_000345_120 Hb_003320_030 Hb_003320_030 Hb_000424_160--Hb_003320_030 Hb_004712_110 Hb_004712_110 Hb_000424_160--Hb_004712_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.042724 0.00652557 0.0308591 0 0.204316 0.0230579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.045032 0.00467162 0.0502246

CAGE analysis