Hb_012184_050

Information

Type -
Description -
Location Contig12184: 48427-53124
Sequence    

Annotation

kegg
ID pop:POPTR_0008s01610g
description hypothetical protein
nr
ID XP_006379449.1
description hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G4Q9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s01610g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06632: 52708-52927 , PASA_asmbl_06633: 52943-53180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012184_050 0.0 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
2 Hb_002805_170 0.0864541848 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
3 Hb_000169_190 0.1011779448 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
4 Hb_000045_320 0.1095744053 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
5 Hb_121729_020 0.1163708178 - - DNA binding protein, putative [Ricinus communis]
6 Hb_007951_100 0.1224459042 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_005695_060 0.1242664215 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
8 Hb_027472_210 0.1271513391 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
9 Hb_002783_120 0.1342437291 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
10 Hb_008246_030 0.1344327854 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
11 Hb_006452_160 0.1347476554 - - structural constituent of ribosome, putative [Ricinus communis]
12 Hb_063409_020 0.1350848383 - - Calcium-binding protein, putative [Ricinus communis]
13 Hb_000504_170 0.1360571043 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
14 Hb_035318_010 0.138797541 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
15 Hb_001703_130 0.1394664822 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
16 Hb_001001_020 0.1404454298 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]
17 Hb_001473_080 0.1412005295 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
18 Hb_027402_090 0.1414031438 - - endonuclease, putative [Ricinus communis]
19 Hb_002612_010 0.1421816815 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
20 Hb_001269_200 0.1454740272 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_012184_050 Hb_012184_050 Hb_002805_170 Hb_002805_170 Hb_012184_050--Hb_002805_170 Hb_000169_190 Hb_000169_190 Hb_012184_050--Hb_000169_190 Hb_000045_320 Hb_000045_320 Hb_012184_050--Hb_000045_320 Hb_121729_020 Hb_121729_020 Hb_012184_050--Hb_121729_020 Hb_007951_100 Hb_007951_100 Hb_012184_050--Hb_007951_100 Hb_005695_060 Hb_005695_060 Hb_012184_050--Hb_005695_060 Hb_002805_170--Hb_007951_100 Hb_001703_130 Hb_001703_130 Hb_002805_170--Hb_001703_130 Hb_010883_080 Hb_010883_080 Hb_002805_170--Hb_010883_080 Hb_002805_170--Hb_000045_320 Hb_002612_010 Hb_002612_010 Hb_002805_170--Hb_002612_010 Hb_027472_210 Hb_027472_210 Hb_000169_190--Hb_027472_210 Hb_188996_010 Hb_188996_010 Hb_000169_190--Hb_188996_010 Hb_007123_070 Hb_007123_070 Hb_000169_190--Hb_007123_070 Hb_027402_090 Hb_027402_090 Hb_000169_190--Hb_027402_090 Hb_058551_010 Hb_058551_010 Hb_000169_190--Hb_058551_010 Hb_002997_160 Hb_002997_160 Hb_000045_320--Hb_002997_160 Hb_000173_150 Hb_000173_150 Hb_000045_320--Hb_000173_150 Hb_001269_200 Hb_001269_200 Hb_000045_320--Hb_001269_200 Hb_001117_190 Hb_001117_190 Hb_000045_320--Hb_001117_190 Hb_000504_170 Hb_000504_170 Hb_121729_020--Hb_000504_170 Hb_003064_030 Hb_003064_030 Hb_121729_020--Hb_003064_030 Hb_121729_020--Hb_002805_170 Hb_121729_020--Hb_005695_060 Hb_008246_030 Hb_008246_030 Hb_121729_020--Hb_008246_030 Hb_006452_160 Hb_006452_160 Hb_007951_100--Hb_006452_160 Hb_000140_330 Hb_000140_330 Hb_007951_100--Hb_000140_330 Hb_002301_270 Hb_002301_270 Hb_007951_100--Hb_002301_270 Hb_156144_030 Hb_156144_030 Hb_007951_100--Hb_156144_030 Hb_007943_120 Hb_007943_120 Hb_007951_100--Hb_007943_120 Hb_002783_120 Hb_002783_120 Hb_005695_060--Hb_002783_120 Hb_001001_020 Hb_001001_020 Hb_005695_060--Hb_001001_020 Hb_000976_080 Hb_000976_080 Hb_005695_060--Hb_000976_080 Hb_000453_190 Hb_000453_190 Hb_005695_060--Hb_000453_190 Hb_152453_010 Hb_152453_010 Hb_005695_060--Hb_152453_010 Hb_005846_020 Hb_005846_020 Hb_005695_060--Hb_005846_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.1169 20.7931 28.3169 5.04427 33.039 26.3879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.37091 6.45457 2.97006 6.55151 3.29899

CAGE analysis