Hb_012188_010

Information

Type -
Description -
Location Contig12188: 38597-41336
Sequence    

Annotation

kegg
ID pmum:103326132
description uncharacterized LOC103326132
nr
ID XP_012068505.1
description PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FQA2
description Uncharacterized protein OS=Theobroma cacao GN=TCM_043787 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012188_010 0.0 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
2 Hb_001217_060 0.0260909956 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_032076_010 0.0974621388 - - -
4 Hb_000071_200 0.1143582929 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
5 Hb_000579_150 0.1976907956 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
6 Hb_005504_010 0.2428477638 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
7 Hb_101040_010 0.2639050846 - - -
8 Hb_005539_300 0.2695584166 - - PREDICTED: deacetoxyvindoline 4-hydroxylase-like [Populus euphratica]
9 Hb_062585_010 0.2915639434 - - hypothetical protein JCGZ_19532 [Jatropha curcas]
10 Hb_001676_030 0.2950848966 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_003772_080 0.2988117425 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
12 Hb_001673_030 0.3095702615 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
13 Hb_063433_010 0.3127988064 - - Chloroplast channel forming outer membrane protein isoform 2 [Theobroma cacao]
14 Hb_001396_170 0.3146317556 - - unnamed protein product [Vitis vinifera]
15 Hb_011909_090 0.3240383462 transcription factor TF Family: NOZZLE PREDICTED: uncharacterized protein LOC105633212 [Jatropha curcas]
16 Hb_000317_090 0.3344992313 - - hypothetical protein RCOM_1176360 [Ricinus communis]
17 Hb_001589_070 0.3345255191 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_002805_140 0.3458497343 - - hypothetical protein POPTR_0001s28390g [Populus trichocarpa]
19 Hb_085922_010 0.3558259244 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_007978_020 0.3643791739 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]

Gene co-expression network

sample Hb_012188_010 Hb_012188_010 Hb_001217_060 Hb_001217_060 Hb_012188_010--Hb_001217_060 Hb_032076_010 Hb_032076_010 Hb_012188_010--Hb_032076_010 Hb_000071_200 Hb_000071_200 Hb_012188_010--Hb_000071_200 Hb_000579_150 Hb_000579_150 Hb_012188_010--Hb_000579_150 Hb_005504_010 Hb_005504_010 Hb_012188_010--Hb_005504_010 Hb_101040_010 Hb_101040_010 Hb_012188_010--Hb_101040_010 Hb_001217_060--Hb_000071_200 Hb_001217_060--Hb_032076_010 Hb_001217_060--Hb_000579_150 Hb_001217_060--Hb_005504_010 Hb_005539_300 Hb_005539_300 Hb_001217_060--Hb_005539_300 Hb_032076_010--Hb_000071_200 Hb_032076_010--Hb_000579_150 Hb_032076_010--Hb_005504_010 Hb_032076_010--Hb_101040_010 Hb_000071_200--Hb_101040_010 Hb_001676_030 Hb_001676_030 Hb_000071_200--Hb_001676_030 Hb_000071_200--Hb_005539_300 Hb_054649_020 Hb_054649_020 Hb_000579_150--Hb_054649_020 Hb_000188_030 Hb_000188_030 Hb_000579_150--Hb_000188_030 Hb_001250_120 Hb_001250_120 Hb_000579_150--Hb_001250_120 Hb_005504_010--Hb_101040_010 Hb_005504_010--Hb_000071_200 Hb_005504_010--Hb_001676_030 Hb_063433_010 Hb_063433_010 Hb_005504_010--Hb_063433_010 Hb_101040_010--Hb_001676_030 Hb_000317_090 Hb_000317_090 Hb_101040_010--Hb_000317_090 Hb_138652_020 Hb_138652_020 Hb_101040_010--Hb_138652_020 Hb_002837_090 Hb_002837_090 Hb_101040_010--Hb_002837_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0194007 0.00858484 0 0 0 0.008223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis