Hb_012193_020

Information

Type -
Description -
Location Contig12193: 20178-22905
Sequence    

Annotation

kegg
ID rcu:RCOM_1612760
description F-box and wd40 domain protein, putative (EC:2.7.11.7)
nr
ID XP_012084540.1
description PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
swissprot
ID Q0DYP5
description Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=Os02g0677700 PE=2 SV=2
trembl
ID A0A067JU76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19808 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012193_020 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
2 Hb_004532_010 0.07808299 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
3 Hb_000599_060 0.1056356858 - - PREDICTED: legumin A-like [Jatropha curcas]
4 Hb_001809_040 0.1226299029 - - PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]
5 Hb_183366_010 0.136004676 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
6 Hb_163115_010 0.1776346498 - - -
7 Hb_000284_070 0.2106662193 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
8 Hb_027014_010 0.2166902907 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_004162_300 0.22441951 - - monovalent cation:proton antiporter, putative [Ricinus communis]
10 Hb_034050_010 0.2896517066 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
11 Hb_121031_010 0.2999124468 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
12 Hb_007761_050 0.3033769231 - - calcineurin-like protein [Hevea brasiliensis]
13 Hb_000007_050 0.3280651974 - - -
14 Hb_000075_050 0.3280651974 - - -
15 Hb_000076_010 0.3280651974 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
16 Hb_000103_500 0.3280651974 - - RNA binding protein, putative [Ricinus communis]
17 Hb_000130_290 0.3280651974 - - glycosyltransferase, putative [Ricinus communis]
18 Hb_000159_010 0.3280651974 - - -
19 Hb_000184_060 0.3280651974 - - -
20 Hb_000193_020 0.3280651974 - - -

Gene co-expression network

sample Hb_012193_020 Hb_012193_020 Hb_004532_010 Hb_004532_010 Hb_012193_020--Hb_004532_010 Hb_000599_060 Hb_000599_060 Hb_012193_020--Hb_000599_060 Hb_001809_040 Hb_001809_040 Hb_012193_020--Hb_001809_040 Hb_183366_010 Hb_183366_010 Hb_012193_020--Hb_183366_010 Hb_163115_010 Hb_163115_010 Hb_012193_020--Hb_163115_010 Hb_000284_070 Hb_000284_070 Hb_012193_020--Hb_000284_070 Hb_004532_010--Hb_000599_060 Hb_004532_010--Hb_001809_040 Hb_004532_010--Hb_183366_010 Hb_004532_010--Hb_163115_010 Hb_027014_010 Hb_027014_010 Hb_004532_010--Hb_027014_010 Hb_000599_060--Hb_001809_040 Hb_000599_060--Hb_183366_010 Hb_000599_060--Hb_163115_010 Hb_000599_060--Hb_027014_010 Hb_001809_040--Hb_183366_010 Hb_001809_040--Hb_163115_010 Hb_001809_040--Hb_027014_010 Hb_004162_300 Hb_004162_300 Hb_001809_040--Hb_004162_300 Hb_183366_010--Hb_163115_010 Hb_183366_010--Hb_027014_010 Hb_183366_010--Hb_004162_300 Hb_163115_010--Hb_027014_010 Hb_163115_010--Hb_004162_300 Hb_007761_050 Hb_007761_050 Hb_000284_070--Hb_007761_050 Hb_001257_020 Hb_001257_020 Hb_000284_070--Hb_001257_020 Hb_000284_070--Hb_004532_010 Hb_000284_070--Hb_000599_060 Hb_148262_020 Hb_148262_020 Hb_000284_070--Hb_148262_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.028334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113828 0 0 0 0

CAGE analysis