Hb_012235_010

Information

Type -
Description -
Location Contig12235: 10667-20392
Sequence    

Annotation

kegg
ID pper:PRUPE_ppb020037mg
description hypothetical protein
nr
ID XP_009599307.1
description PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M5VT03
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb020037mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012235_010 0.0 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
2 Hb_016354_010 0.0358923055 - - -
3 Hb_079902_030 0.0571980099 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002042_240 0.0879753097 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_002850_030 0.1146437687 - - -
6 Hb_038508_010 0.211280635 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
7 Hb_012807_090 0.2281337302 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
8 Hb_000155_240 0.2300629862 - - PREDICTED: uncharacterized protein LOC104888642 [Beta vulgaris subsp. vulgaris]
9 Hb_153636_010 0.2356551266 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
10 Hb_004951_050 0.2356928244 - - conserved hypothetical protein [Ricinus communis]
11 Hb_014929_010 0.2393724431 - - -
12 Hb_000789_140 0.2448352317 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
13 Hb_000351_150 0.2466495534 - - Wall-associated kinase 2, putative [Theobroma cacao]
14 Hb_000143_070 0.2473991802 - - -
15 Hb_000300_460 0.2539050762 - - Mavicyanin, putative [Ricinus communis]
16 Hb_056550_010 0.2556817352 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
17 Hb_003279_010 0.257028282 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_121954_010 0.257290122 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
19 Hb_074822_010 0.2573649688 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
20 Hb_005379_010 0.2590783596 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_012235_010 Hb_012235_010 Hb_016354_010 Hb_016354_010 Hb_012235_010--Hb_016354_010 Hb_079902_030 Hb_079902_030 Hb_012235_010--Hb_079902_030 Hb_002042_240 Hb_002042_240 Hb_012235_010--Hb_002042_240 Hb_002850_030 Hb_002850_030 Hb_012235_010--Hb_002850_030 Hb_038508_010 Hb_038508_010 Hb_012235_010--Hb_038508_010 Hb_012807_090 Hb_012807_090 Hb_012235_010--Hb_012807_090 Hb_016354_010--Hb_079902_030 Hb_016354_010--Hb_002042_240 Hb_016354_010--Hb_002850_030 Hb_016354_010--Hb_012807_090 Hb_004951_050 Hb_004951_050 Hb_016354_010--Hb_004951_050 Hb_079902_030--Hb_002042_240 Hb_079902_030--Hb_002850_030 Hb_079902_030--Hb_012807_090 Hb_079902_030--Hb_004951_050 Hb_002042_240--Hb_002850_030 Hb_002042_240--Hb_012807_090 Hb_002042_240--Hb_004951_050 Hb_002850_030--Hb_012807_090 Hb_002850_030--Hb_004951_050 Hb_000155_240 Hb_000155_240 Hb_038508_010--Hb_000155_240 Hb_000789_140 Hb_000789_140 Hb_038508_010--Hb_000789_140 Hb_009152_030 Hb_009152_030 Hb_038508_010--Hb_009152_030 Hb_038508_010--Hb_016354_010 Hb_038508_010--Hb_079902_030 Hb_012807_090--Hb_004951_050 Hb_014929_010 Hb_014929_010 Hb_012807_090--Hb_014929_010 Hb_000143_070 Hb_000143_070 Hb_012807_090--Hb_000143_070 Hb_000300_460 Hb_000300_460 Hb_012807_090--Hb_000300_460 Hb_003279_010 Hb_003279_010 Hb_012807_090--Hb_003279_010 Hb_121954_010 Hb_121954_010 Hb_012807_090--Hb_121954_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0371709 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0377521

CAGE analysis