Hb_012239_030

Information

Type -
Description -
Location Contig12239: 25573-30215
Sequence    

Annotation

kegg
ID rcu:RCOM_0598000
description ankyrin repeat-containing protein, putative
nr
ID XP_002525995.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9ZU96
description Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=2 SV=1
trembl
ID B9SJ26
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0598000 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing protein at2g01680

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06808: 25597-30217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012239_030 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_001205_110 0.0457155113 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
3 Hb_000139_130 0.1025143241 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
4 Hb_008749_030 0.1064443081 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
5 Hb_010697_040 0.107649669 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
6 Hb_000352_070 0.1083444578 - - Potassium transporter, putative [Ricinus communis]
7 Hb_080451_010 0.1131456059 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
8 Hb_002400_140 0.1157148531 - - protein kinase, putative [Ricinus communis]
9 Hb_000487_380 0.1159893034 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
10 Hb_006910_060 0.1175700319 - - PREDICTED: MACPF domain-containing protein At1g14780-like [Jatropha curcas]
11 Hb_000069_480 0.1185563705 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001489_100 0.1187416108 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
13 Hb_006907_140 0.1193858744 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009252_050 0.1198425256 - - protein binding protein, putative [Ricinus communis]
15 Hb_003092_060 0.1202719749 - - calcineurin-like phosphoesterase [Manihot esculenta]
16 Hb_001989_050 0.12155073 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
17 Hb_002662_050 0.121560468 - - cysteine protease CP1 [Manihot esculenta]
18 Hb_000365_330 0.1218113686 - - zinc finger protein, putative [Ricinus communis]
19 Hb_150346_010 0.1224902737 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
20 Hb_002005_120 0.1231973946 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]

Gene co-expression network

sample Hb_012239_030 Hb_012239_030 Hb_001205_110 Hb_001205_110 Hb_012239_030--Hb_001205_110 Hb_000139_130 Hb_000139_130 Hb_012239_030--Hb_000139_130 Hb_008749_030 Hb_008749_030 Hb_012239_030--Hb_008749_030 Hb_010697_040 Hb_010697_040 Hb_012239_030--Hb_010697_040 Hb_000352_070 Hb_000352_070 Hb_012239_030--Hb_000352_070 Hb_080451_010 Hb_080451_010 Hb_012239_030--Hb_080451_010 Hb_001205_110--Hb_010697_040 Hb_001205_110--Hb_008749_030 Hb_001205_110--Hb_000139_130 Hb_000608_260 Hb_000608_260 Hb_001205_110--Hb_000608_260 Hb_002213_040 Hb_002213_040 Hb_001205_110--Hb_002213_040 Hb_001033_050 Hb_001033_050 Hb_000139_130--Hb_001033_050 Hb_004109_230 Hb_004109_230 Hb_000139_130--Hb_004109_230 Hb_004668_060 Hb_004668_060 Hb_000139_130--Hb_004668_060 Hb_001377_160 Hb_001377_160 Hb_000139_130--Hb_001377_160 Hb_061878_010 Hb_061878_010 Hb_000139_130--Hb_061878_010 Hb_004109_370 Hb_004109_370 Hb_000139_130--Hb_004109_370 Hb_000552_100 Hb_000552_100 Hb_008749_030--Hb_000552_100 Hb_001989_050 Hb_001989_050 Hb_008749_030--Hb_001989_050 Hb_000261_100 Hb_000261_100 Hb_008749_030--Hb_000261_100 Hb_002400_140 Hb_002400_140 Hb_008749_030--Hb_002400_140 Hb_010697_040--Hb_000139_130 Hb_008253_020 Hb_008253_020 Hb_010697_040--Hb_008253_020 Hb_007508_080 Hb_007508_080 Hb_010697_040--Hb_007508_080 Hb_000046_070 Hb_000046_070 Hb_010697_040--Hb_000046_070 Hb_010712_090 Hb_010712_090 Hb_010697_040--Hb_010712_090 Hb_002027_280 Hb_002027_280 Hb_000352_070--Hb_002027_280 Hb_134362_010 Hb_134362_010 Hb_000352_070--Hb_134362_010 Hb_000949_020 Hb_000949_020 Hb_000352_070--Hb_000949_020 Hb_004429_010 Hb_004429_010 Hb_000352_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000352_070--Hb_002284_170 Hb_004785_030 Hb_004785_030 Hb_000352_070--Hb_004785_030 Hb_004162_120 Hb_004162_120 Hb_080451_010--Hb_004162_120 Hb_000107_560 Hb_000107_560 Hb_080451_010--Hb_000107_560 Hb_065500_030 Hb_065500_030 Hb_080451_010--Hb_065500_030 Hb_000979_240 Hb_000979_240 Hb_080451_010--Hb_000979_240 Hb_080451_010--Hb_001205_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.5752 69.0477 16.7731 60.8846 42.1845 32.6471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8865 8.57648 12.3463 40.2517 34.1519

CAGE analysis