Hb_012239_060

Information

Type -
Description -
Location Contig12239: 66364-67805
Sequence    

Annotation

kegg
ID rcu:RCOM_0597860
description diphosphoinositol polyphosphate phosphohydrolase, putative (EC:3.6.1.52)
nr
ID XP_012072296.1
description PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
swissprot
ID Q9ZU95
description Nudix hydrolase 17, mitochondrial OS=Arabidopsis thaliana GN=NUDT17 PE=2 SV=1
trembl
ID A0A067L1Y6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04752 PE=3 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06810: 66357-67109 , PASA_asmbl_06811: 67319-67676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012239_060 0.0 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
2 Hb_000963_120 0.0976203179 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
3 Hb_002119_110 0.1026616716 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
4 Hb_016277_030 0.1146327621 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
5 Hb_003097_220 0.1157439283 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
6 Hb_005183_100 0.1158338496 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
7 Hb_005057_030 0.1199290859 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
8 Hb_000000_290 0.1212903357 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
9 Hb_004374_030 0.1220983689 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
10 Hb_001369_390 0.1235594155 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
11 Hb_005723_090 0.1254921572 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001296_060 0.1317946646 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
13 Hb_000309_070 0.1329998949 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
14 Hb_004032_190 0.1360197673 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
15 Hb_001206_100 0.1364094386 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]
16 Hb_001097_140 0.1369724342 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000271_130 0.1371305539 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
18 Hb_002613_040 0.1382499446 - - phosphate translocator-related family protein [Populus trichocarpa]
19 Hb_001008_080 0.1384704669 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
20 Hb_002095_020 0.138685787 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012239_060 Hb_012239_060 Hb_000963_120 Hb_000963_120 Hb_012239_060--Hb_000963_120 Hb_002119_110 Hb_002119_110 Hb_012239_060--Hb_002119_110 Hb_016277_030 Hb_016277_030 Hb_012239_060--Hb_016277_030 Hb_003097_220 Hb_003097_220 Hb_012239_060--Hb_003097_220 Hb_005183_100 Hb_005183_100 Hb_012239_060--Hb_005183_100 Hb_005057_030 Hb_005057_030 Hb_012239_060--Hb_005057_030 Hb_000963_120--Hb_002119_110 Hb_004374_030 Hb_004374_030 Hb_000963_120--Hb_004374_030 Hb_000963_120--Hb_016277_030 Hb_006916_140 Hb_006916_140 Hb_000963_120--Hb_006916_140 Hb_000309_070 Hb_000309_070 Hb_000963_120--Hb_000309_070 Hb_002119_110--Hb_004374_030 Hb_002119_110--Hb_016277_030 Hb_000784_060 Hb_000784_060 Hb_002119_110--Hb_000784_060 Hb_004032_190 Hb_004032_190 Hb_002119_110--Hb_004032_190 Hb_016277_030--Hb_004374_030 Hb_004466_090 Hb_004466_090 Hb_016277_030--Hb_004466_090 Hb_016277_030--Hb_005183_100 Hb_001206_100 Hb_001206_100 Hb_016277_030--Hb_001206_100 Hb_016277_030--Hb_004032_190 Hb_016277_030--Hb_000784_060 Hb_006355_060 Hb_006355_060 Hb_003097_220--Hb_006355_060 Hb_002613_040 Hb_002613_040 Hb_003097_220--Hb_002613_040 Hb_114917_010 Hb_114917_010 Hb_003097_220--Hb_114917_010 Hb_003097_220--Hb_005057_030 Hb_005725_160 Hb_005725_160 Hb_003097_220--Hb_005725_160 Hb_005723_090 Hb_005723_090 Hb_005183_100--Hb_005723_090 Hb_005183_100--Hb_001206_100 Hb_009522_020 Hb_009522_020 Hb_005183_100--Hb_009522_020 Hb_005183_100--Hb_005057_030 Hb_000000_290 Hb_000000_290 Hb_005183_100--Hb_000000_290 Hb_005057_030--Hb_005723_090 Hb_125961_010 Hb_125961_010 Hb_005057_030--Hb_125961_010 Hb_000120_480 Hb_000120_480 Hb_005057_030--Hb_000120_480 Hb_002713_060 Hb_002713_060 Hb_005057_030--Hb_002713_060 Hb_003226_230 Hb_003226_230 Hb_005057_030--Hb_003226_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0323889 0.928885 1.01039 3.64073 0.0629317 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.149339 0 0 0.595704 4.2087

CAGE analysis