Hb_012239_070

Information

Type -
Description -
Location Contig12239: 72723-76251
Sequence    

Annotation

kegg
ID rcu:RCOM_0597850
description protein with unknown function
nr
ID XP_012072294.1
description PREDICTED: uncharacterized protein LOC105634113 [Jatropha curcas]
swissprot
ID Q8S9K3
description Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2
trembl
ID B9SJ21
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0597850 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ran bp2 nzf zinc finger-like superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06813: 75074-75933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012239_070 0.0 - - PREDICTED: uncharacterized protein LOC105634113 [Jatropha curcas]
2 Hb_001789_110 0.0694207619 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_007472_070 0.0720095834 - - cir, putative [Ricinus communis]
4 Hb_007413_010 0.0775951236 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
5 Hb_027073_020 0.0776947757 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
6 Hb_003883_060 0.0815108382 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
7 Hb_008948_020 0.0825518405 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
8 Hb_003117_030 0.0850848643 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
9 Hb_006913_020 0.0862496309 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
10 Hb_102698_010 0.0887134139 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
11 Hb_003581_200 0.0896184032 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
12 Hb_002046_160 0.0896718523 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000699_150 0.0903145886 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
14 Hb_005260_030 0.0914290759 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
15 Hb_001377_190 0.0921257731 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
16 Hb_006210_010 0.092202655 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
17 Hb_011537_060 0.0922671712 - - UPF0061 protein azo1574 [Morus notabilis]
18 Hb_006663_060 0.0923302106 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
19 Hb_003517_040 0.0925084328 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
20 Hb_015099_030 0.0929378095 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]

Gene co-expression network

sample Hb_012239_070 Hb_012239_070 Hb_001789_110 Hb_001789_110 Hb_012239_070--Hb_001789_110 Hb_007472_070 Hb_007472_070 Hb_012239_070--Hb_007472_070 Hb_007413_010 Hb_007413_010 Hb_012239_070--Hb_007413_010 Hb_027073_020 Hb_027073_020 Hb_012239_070--Hb_027073_020 Hb_003883_060 Hb_003883_060 Hb_012239_070--Hb_003883_060 Hb_008948_020 Hb_008948_020 Hb_012239_070--Hb_008948_020 Hb_001789_110--Hb_027073_020 Hb_003517_040 Hb_003517_040 Hb_001789_110--Hb_003517_040 Hb_001789_110--Hb_007413_010 Hb_122968_010 Hb_122968_010 Hb_001789_110--Hb_122968_010 Hb_188281_040 Hb_188281_040 Hb_001789_110--Hb_188281_040 Hb_006913_020 Hb_006913_020 Hb_001789_110--Hb_006913_020 Hb_004705_170 Hb_004705_170 Hb_007472_070--Hb_004705_170 Hb_000778_010 Hb_000778_010 Hb_007472_070--Hb_000778_010 Hb_000699_150 Hb_000699_150 Hb_007472_070--Hb_000699_150 Hb_000215_300 Hb_000215_300 Hb_007472_070--Hb_000215_300 Hb_000347_250 Hb_000347_250 Hb_007472_070--Hb_000347_250 Hb_006059_040 Hb_006059_040 Hb_007472_070--Hb_006059_040 Hb_007413_010--Hb_006913_020 Hb_003117_030 Hb_003117_030 Hb_007413_010--Hb_003117_030 Hb_007413_010--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_007413_010--Hb_001377_190 Hb_001925_060 Hb_001925_060 Hb_007413_010--Hb_001925_060 Hb_001999_310 Hb_001999_310 Hb_027073_020--Hb_001999_310 Hb_000789_200 Hb_000789_200 Hb_027073_020--Hb_000789_200 Hb_029243_030 Hb_029243_030 Hb_027073_020--Hb_029243_030 Hb_027073_020--Hb_122968_010 Hb_000406_200 Hb_000406_200 Hb_027073_020--Hb_000406_200 Hb_001301_150 Hb_001301_150 Hb_003883_060--Hb_001301_150 Hb_013726_090 Hb_013726_090 Hb_003883_060--Hb_013726_090 Hb_003883_060--Hb_004705_170 Hb_000976_140 Hb_000976_140 Hb_003883_060--Hb_000976_140 Hb_003581_200 Hb_003581_200 Hb_003883_060--Hb_003581_200 Hb_000167_010 Hb_000167_010 Hb_003883_060--Hb_000167_010 Hb_002411_110 Hb_002411_110 Hb_008948_020--Hb_002411_110 Hb_001716_040 Hb_001716_040 Hb_008948_020--Hb_001716_040 Hb_008948_020--Hb_006913_020 Hb_004435_030 Hb_004435_030 Hb_008948_020--Hb_004435_030 Hb_005582_040 Hb_005582_040 Hb_008948_020--Hb_005582_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.44416 2.56822 2.62259 3.46764 1.29061 1.93034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89432 2.6325 1.39179 3.46809 4.1218

CAGE analysis