Hb_012239_080

Information

Type -
Description -
Location Contig12239: 77742-79493
Sequence    

Annotation

kegg
ID rcu:RCOM_0597840
description Desacetoxyvindoline 4-hydroxylase, putative (EC:1.14.11.20)
nr
ID XP_012072293.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
swissprot
ID Q94A78
description 1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g03400 PE=2 SV=1
trembl
ID A0A067KPN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04750 PE=3 SV=1
Gene Ontology
ID GO:0016706
description 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06815: 77801-78997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012239_080 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
2 Hb_061195_010 0.0992548415 - - Galactose oxidase precursor, putative [Ricinus communis]
3 Hb_033363_080 0.1059862175 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
4 Hb_004055_180 0.1163103747 - - cell wall invertase [Manihot esculenta]
5 Hb_004712_080 0.1238606956 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
6 Hb_004774_060 0.1290512216 - - -
7 Hb_029510_110 0.1331489749 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
8 Hb_004195_240 0.1340885252 - - Peroxidase 72 precursor, putative [Ricinus communis]
9 Hb_000659_010 0.1352079434 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
10 Hb_148435_010 0.1359236454 - - glutathione s-transferase, putative [Ricinus communis]
11 Hb_012796_050 0.1407267696 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
12 Hb_173448_010 0.1410695004 - - PREDICTED: galactose oxidase-like [Jatropha curcas]
13 Hb_175968_010 0.1429747314 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
14 Hb_097908_010 0.1441245666 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
15 Hb_001279_220 0.144225387 - - protein binding protein, putative [Ricinus communis]
16 Hb_000466_090 0.1467714861 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
17 Hb_109673_010 0.1484943199 - - glutathione s-transferase, putative [Ricinus communis]
18 Hb_002248_020 0.1486391357 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
19 Hb_004222_010 0.1489131488 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
20 Hb_000563_610 0.1556854362 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]

Gene co-expression network

sample Hb_012239_080 Hb_012239_080 Hb_061195_010 Hb_061195_010 Hb_012239_080--Hb_061195_010 Hb_033363_080 Hb_033363_080 Hb_012239_080--Hb_033363_080 Hb_004055_180 Hb_004055_180 Hb_012239_080--Hb_004055_180 Hb_004712_080 Hb_004712_080 Hb_012239_080--Hb_004712_080 Hb_004774_060 Hb_004774_060 Hb_012239_080--Hb_004774_060 Hb_029510_110 Hb_029510_110 Hb_012239_080--Hb_029510_110 Hb_173448_010 Hb_173448_010 Hb_061195_010--Hb_173448_010 Hb_061195_010--Hb_029510_110 Hb_061195_010--Hb_004055_180 Hb_004195_240 Hb_004195_240 Hb_061195_010--Hb_004195_240 Hb_148435_010 Hb_148435_010 Hb_061195_010--Hb_148435_010 Hb_033363_080--Hb_004774_060 Hb_011145_020 Hb_011145_020 Hb_033363_080--Hb_011145_020 Hb_175968_010 Hb_175968_010 Hb_033363_080--Hb_175968_010 Hb_000438_190 Hb_000438_190 Hb_033363_080--Hb_000438_190 Hb_012796_050 Hb_012796_050 Hb_033363_080--Hb_012796_050 Hb_033363_080--Hb_004055_180 Hb_004055_180--Hb_004774_060 Hb_097908_010 Hb_097908_010 Hb_004055_180--Hb_097908_010 Hb_001464_010 Hb_001464_010 Hb_004055_180--Hb_001464_010 Hb_000563_610 Hb_000563_610 Hb_004055_180--Hb_000563_610 Hb_004055_180--Hb_175968_010 Hb_007417_020 Hb_007417_020 Hb_004055_180--Hb_007417_020 Hb_004712_080--Hb_012796_050 Hb_004712_080--Hb_175968_010 Hb_001279_220 Hb_001279_220 Hb_004712_080--Hb_001279_220 Hb_004712_080--Hb_033363_080 Hb_001454_300 Hb_001454_300 Hb_004712_080--Hb_001454_300 Hb_004712_080--Hb_004774_060 Hb_004774_060--Hb_175968_010 Hb_004774_060--Hb_001279_220 Hb_004774_060--Hb_097908_010 Hb_000659_010 Hb_000659_010 Hb_004774_060--Hb_000659_010 Hb_001104_200 Hb_001104_200 Hb_029510_110--Hb_001104_200 Hb_000204_030 Hb_000204_030 Hb_029510_110--Hb_000204_030 Hb_029510_110--Hb_000563_610 Hb_001366_250 Hb_001366_250 Hb_029510_110--Hb_001366_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.311388 1.57313 1.4567 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.464288 0.104359 0 17.7482 1.52484

CAGE analysis