Hb_012239_100

Information

Type -
Description -
Location Contig12239: 108307-117527
Sequence    

Annotation

kegg
ID vvi:100266596
description 1-aminocyclopropane-1-carboxylate oxidase homolog 1
nr
ID CAN82828.1
description hypothetical protein VITISV_043897 [Vitis vinifera]
swissprot
ID Q84MB3
description 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1
trembl
ID A0A0E0LA30
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID GO:0016706
description 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06816: 113740-115604
cDNA
(Sanger)
(ID:Location)		 026_I10.ab1: 114446-115603

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012239_100 0.0 - - hypothetical protein VITISV_043897 [Vitis vinifera]
2 Hb_009838_040 0.1171311428 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
3 Hb_000215_180 0.1445154609 - - hypothetical protein 17 [Hevea brasiliensis]
4 Hb_005000_160 0.1452714122 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
5 Hb_001579_140 0.1640015138 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
6 Hb_000432_050 0.169955876 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
7 Hb_001538_140 0.1700985084 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
8 Hb_029243_040 0.1705304502 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Populus euphratica]
9 Hb_012395_210 0.1707636421 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000922_100 0.1721032506 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
11 Hb_000380_020 0.1733017258 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
12 Hb_010594_030 0.1741991192 - - -
13 Hb_001279_130 0.1745792592 - - hypothetical protein L484_017676 [Morus notabilis]
14 Hb_000784_030 0.1749323914 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
15 Hb_002014_160 0.1762863306 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor C-1 [Jatropha curcas]
16 Hb_005539_210 0.1779252602 - - -
17 Hb_000260_580 0.1780661291 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003371_100 0.1795792393 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
19 Hb_002138_010 0.1802608853 - - hypothetical protein POPTR_0001s30620g [Populus trichocarpa]
20 Hb_001213_120 0.1808917502 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]

Gene co-expression network

sample Hb_012239_100 Hb_012239_100 Hb_009838_040 Hb_009838_040 Hb_012239_100--Hb_009838_040 Hb_000215_180 Hb_000215_180 Hb_012239_100--Hb_000215_180 Hb_005000_160 Hb_005000_160 Hb_012239_100--Hb_005000_160 Hb_001579_140 Hb_001579_140 Hb_012239_100--Hb_001579_140 Hb_000432_050 Hb_000432_050 Hb_012239_100--Hb_000432_050 Hb_001538_140 Hb_001538_140 Hb_012239_100--Hb_001538_140 Hb_009838_040--Hb_000215_180 Hb_009838_040--Hb_005000_160 Hb_000788_080 Hb_000788_080 Hb_009838_040--Hb_000788_080 Hb_001258_140 Hb_001258_140 Hb_009838_040--Hb_001258_140 Hb_000106_100 Hb_000106_100 Hb_009838_040--Hb_000106_100 Hb_183086_040 Hb_183086_040 Hb_000215_180--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000215_180--Hb_000922_100 Hb_000780_210 Hb_000780_210 Hb_000215_180--Hb_000780_210 Hb_001377_380 Hb_001377_380 Hb_000215_180--Hb_001377_380 Hb_000896_120 Hb_000896_120 Hb_000215_180--Hb_000896_120 Hb_000215_180--Hb_000106_100 Hb_003371_100 Hb_003371_100 Hb_005000_160--Hb_003371_100 Hb_001276_060 Hb_001276_060 Hb_005000_160--Hb_001276_060 Hb_005000_160--Hb_000788_080 Hb_011671_400 Hb_011671_400 Hb_005000_160--Hb_011671_400 Hb_000613_160 Hb_000613_160 Hb_005000_160--Hb_000613_160 Hb_000792_120 Hb_000792_120 Hb_001579_140--Hb_000792_120 Hb_001579_140--Hb_000613_160 Hb_001579_140--Hb_005000_160 Hb_001579_140--Hb_009838_040 Hb_000749_240 Hb_000749_240 Hb_001579_140--Hb_000749_240 Hb_000432_050--Hb_001538_140 Hb_029510_040 Hb_029510_040 Hb_000432_050--Hb_029510_040 Hb_005839_110 Hb_005839_110 Hb_000432_050--Hb_005839_110 Hb_002756_020 Hb_002756_020 Hb_000432_050--Hb_002756_020 Hb_009314_010 Hb_009314_010 Hb_000432_050--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000432_050--Hb_000771_130 Hb_003147_050 Hb_003147_050 Hb_001538_140--Hb_003147_050 Hb_002290_040 Hb_002290_040 Hb_001538_140--Hb_002290_040 Hb_005614_050 Hb_005614_050 Hb_001538_140--Hb_005614_050 Hb_000363_200 Hb_000363_200 Hb_001538_140--Hb_000363_200 Hb_002078_460 Hb_002078_460 Hb_001538_140--Hb_002078_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.50147 0.895165 0.428283 0.23342 0.960943 1.30543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0917 10.1493 9.50649 3.92947 0.0739743

CAGE analysis