Hb_012244_010

Information

Type -
Description -
Location Contig12244: 16705-19050
Sequence    

Annotation

kegg
ID rcu:RCOM_0343550
description hypothetical protein
nr
ID XP_012080867.1
description PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2Z6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16244 PE=4 SV=1
Gene Ontology
ID GO:0016874
description trna-splicing ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06818: 16163-16435 , PASA_asmbl_06819: 17492-19054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012244_010 0.0 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
2 Hb_011249_020 0.0831250665 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
3 Hb_002392_010 0.0909545276 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
4 Hb_004257_010 0.1036720538 - - CMP-sialic acid transporter, putative [Ricinus communis]
5 Hb_001153_120 0.10613579 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
6 Hb_180343_010 0.1120236856 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
7 Hb_000240_030 0.1142686594 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002045_060 0.1152411889 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
9 Hb_001307_030 0.1169606548 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
10 Hb_000032_370 0.1187730903 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
11 Hb_000329_210 0.1195880893 - - Golgi snare 12 isoform 1 [Theobroma cacao]
12 Hb_002110_100 0.1199442177 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
13 Hb_000428_060 0.1214801399 - - malate dehydrogenase, putative [Ricinus communis]
14 Hb_000590_120 0.1223322967 - - dehydroascorbate reductase, putative [Ricinus communis]
15 Hb_003086_080 0.1227974154 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
16 Hb_066842_010 0.123903727 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
17 Hb_003453_050 0.1250499308 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
18 Hb_002184_090 0.1255431055 - - DNA binding protein, putative [Ricinus communis]
19 Hb_011861_100 0.1259503761 - - amino acid transporter, putative [Ricinus communis]
20 Hb_007441_080 0.1260157218 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]

Gene co-expression network

sample Hb_012244_010 Hb_012244_010 Hb_011249_020 Hb_011249_020 Hb_012244_010--Hb_011249_020 Hb_002392_010 Hb_002392_010 Hb_012244_010--Hb_002392_010 Hb_004257_010 Hb_004257_010 Hb_012244_010--Hb_004257_010 Hb_001153_120 Hb_001153_120 Hb_012244_010--Hb_001153_120 Hb_180343_010 Hb_180343_010 Hb_012244_010--Hb_180343_010 Hb_000240_030 Hb_000240_030 Hb_012244_010--Hb_000240_030 Hb_001307_030 Hb_001307_030 Hb_011249_020--Hb_001307_030 Hb_000297_120 Hb_000297_120 Hb_011249_020--Hb_000297_120 Hb_011249_020--Hb_000240_030 Hb_000649_140 Hb_000649_140 Hb_011249_020--Hb_000649_140 Hb_006683_070 Hb_006683_070 Hb_011249_020--Hb_006683_070 Hb_001946_390 Hb_001946_390 Hb_002392_010--Hb_001946_390 Hb_032920_070 Hb_032920_070 Hb_002392_010--Hb_032920_070 Hb_002110_100 Hb_002110_100 Hb_002392_010--Hb_002110_100 Hb_000185_220 Hb_000185_220 Hb_002392_010--Hb_000185_220 Hb_066842_010 Hb_066842_010 Hb_002392_010--Hb_066842_010 Hb_005601_040 Hb_005601_040 Hb_002392_010--Hb_005601_040 Hb_000329_210 Hb_000329_210 Hb_004257_010--Hb_000329_210 Hb_004257_010--Hb_002392_010 Hb_002184_090 Hb_002184_090 Hb_004257_010--Hb_002184_090 Hb_001195_060 Hb_001195_060 Hb_004257_010--Hb_001195_060 Hb_005167_010 Hb_005167_010 Hb_004257_010--Hb_005167_010 Hb_001892_070 Hb_001892_070 Hb_004257_010--Hb_001892_070 Hb_001059_150 Hb_001059_150 Hb_001153_120--Hb_001059_150 Hb_002045_060 Hb_002045_060 Hb_001153_120--Hb_002045_060 Hb_000377_150 Hb_000377_150 Hb_001153_120--Hb_000377_150 Hb_000428_060 Hb_000428_060 Hb_001153_120--Hb_000428_060 Hb_011861_100 Hb_011861_100 Hb_001153_120--Hb_011861_100 Hb_008147_090 Hb_008147_090 Hb_180343_010--Hb_008147_090 Hb_001662_130 Hb_001662_130 Hb_180343_010--Hb_001662_130 Hb_000392_340 Hb_000392_340 Hb_180343_010--Hb_000392_340 Hb_021409_080 Hb_021409_080 Hb_180343_010--Hb_021409_080 Hb_001489_110 Hb_001489_110 Hb_180343_010--Hb_001489_110 Hb_180343_010--Hb_002184_090 Hb_000590_120 Hb_000590_120 Hb_000240_030--Hb_000590_120 Hb_000240_030--Hb_066842_010 Hb_000240_030--Hb_006683_070 Hb_000240_030--Hb_002392_010 Hb_000240_030--Hb_002110_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.9922 16.1729 75.5079 122.885 14.3336 32.0223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.0549 73.8725 103.541 63.6331 130.245

CAGE analysis