Hb_012251_010

Information

Type -
Description -
Location Contig12251: 10220-12864
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06846: 12544-12920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012251_010 0.0 - - -
2 Hb_000045_250 0.0688992751 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
3 Hb_000203_020 0.0801326899 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
4 Hb_174865_010 0.0970982769 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
5 Hb_000948_220 0.1037564947 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
6 Hb_000915_120 0.1042064986 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
7 Hb_000042_260 0.104913441 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
8 Hb_004223_040 0.1060741965 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
9 Hb_000046_560 0.1062889475 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
10 Hb_005063_050 0.1063044822 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
11 Hb_000093_110 0.1066561829 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
12 Hb_000735_040 0.1069581278 - - 60S ribosomal protein L32A [Hevea brasiliensis]
13 Hb_000699_090 0.1073744103 - - cyclophilin, putative [Ricinus communis]
14 Hb_122239_010 0.1074749864 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
15 Hb_002811_090 0.1083678805 - - 40S ribosomal protein S24A [Hevea brasiliensis]
16 Hb_000676_160 0.1085579926 - - folate carrier protein, putative [Ricinus communis]
17 Hb_179296_010 0.1095393641 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
18 Hb_004007_180 0.110151906 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
19 Hb_008921_020 0.110280374 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
20 Hb_009476_020 0.1104942143 - - tryptophan biosynthesis protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012251_010 Hb_012251_010 Hb_000045_250 Hb_000045_250 Hb_012251_010--Hb_000045_250 Hb_000203_020 Hb_000203_020 Hb_012251_010--Hb_000203_020 Hb_174865_010 Hb_174865_010 Hb_012251_010--Hb_174865_010 Hb_000948_220 Hb_000948_220 Hb_012251_010--Hb_000948_220 Hb_000915_120 Hb_000915_120 Hb_012251_010--Hb_000915_120 Hb_000042_260 Hb_000042_260 Hb_012251_010--Hb_000042_260 Hb_000045_250--Hb_000203_020 Hb_000134_070 Hb_000134_070 Hb_000045_250--Hb_000134_070 Hb_003226_210 Hb_003226_210 Hb_000045_250--Hb_003226_210 Hb_007416_020 Hb_007416_020 Hb_000045_250--Hb_007416_020 Hb_001882_070 Hb_001882_070 Hb_000045_250--Hb_001882_070 Hb_000203_020--Hb_000915_120 Hb_007120_090 Hb_007120_090 Hb_000203_020--Hb_007120_090 Hb_000203_020--Hb_000042_260 Hb_002006_130 Hb_002006_130 Hb_000203_020--Hb_002006_130 Hb_000735_040 Hb_000735_040 Hb_174865_010--Hb_000735_040 Hb_000676_160 Hb_000676_160 Hb_174865_010--Hb_000676_160 Hb_179296_010 Hb_179296_010 Hb_174865_010--Hb_179296_010 Hb_003018_020 Hb_003018_020 Hb_174865_010--Hb_003018_020 Hb_000317_070 Hb_000317_070 Hb_174865_010--Hb_000317_070 Hb_007441_300 Hb_007441_300 Hb_174865_010--Hb_007441_300 Hb_000087_130 Hb_000087_130 Hb_000948_220--Hb_000087_130 Hb_000948_220--Hb_007120_090 Hb_002838_030 Hb_002838_030 Hb_000948_220--Hb_002838_030 Hb_001155_040 Hb_001155_040 Hb_000948_220--Hb_001155_040 Hb_000948_220--Hb_000317_070 Hb_000948_220--Hb_174865_010 Hb_000915_120--Hb_002838_030 Hb_000915_120--Hb_002006_130 Hb_002588_010 Hb_002588_010 Hb_000915_120--Hb_002588_010 Hb_006588_080 Hb_006588_080 Hb_000915_120--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000915_120--Hb_000062_390 Hb_019516_100 Hb_019516_100 Hb_000042_260--Hb_019516_100 Hb_172221_010 Hb_172221_010 Hb_000042_260--Hb_172221_010 Hb_000042_260--Hb_002588_010 Hb_002909_130 Hb_002909_130 Hb_000042_260--Hb_002909_130 Hb_000329_020 Hb_000329_020 Hb_000042_260--Hb_000329_020 Hb_026398_010 Hb_026398_010 Hb_000042_260--Hb_026398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25443 0.442025 0.940396 1.79441 0.649831 1.31625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.34776 6.43282 1.4113 0.566836 0.89465

CAGE analysis