Hb_012253_010

Information

Type -
Description -
Location Contig12253: 2442-6955
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012253_010 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_005438_010 0.2025034075 - - PREDICTED: uncharacterized protein LOC104902779 [Beta vulgaris subsp. vulgaris]
3 Hb_150751_010 0.2669940047 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
4 Hb_011640_030 0.2881479641 - - 60S ribosomal protein L34A [Hevea brasiliensis]
5 Hb_159679_010 0.2906717133 - - PREDICTED: uncharacterized protein LOC105786838 [Gossypium raimondii]
6 Hb_001623_210 0.2953219356 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
7 Hb_008768_030 0.2971114784 - - -
8 Hb_002243_080 0.2971977016 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Vitis vinifera]
9 Hb_075449_050 0.3153711859 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
10 Hb_105712_010 0.3159915178 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
11 Hb_001780_070 0.3233576188 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
12 Hb_001357_130 0.3291871763 - - hypothetical protein JCGZ_00933 [Jatropha curcas]
13 Hb_002943_030 0.329869072 - - -
14 Hb_007904_140 0.3327307208 - - -
15 Hb_002000_110 0.3372922665 - - ASR-like protein 2 [Hevea brasiliensis]
16 Hb_001243_010 0.3396759261 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
17 Hb_000098_320 0.3400920059 - - -
18 Hb_137133_010 0.3402850003 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
19 Hb_005616_030 0.3409159134 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
20 Hb_088144_010 0.341103108 - - cellulose synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_012253_010 Hb_012253_010 Hb_005438_010 Hb_005438_010 Hb_012253_010--Hb_005438_010 Hb_150751_010 Hb_150751_010 Hb_012253_010--Hb_150751_010 Hb_011640_030 Hb_011640_030 Hb_012253_010--Hb_011640_030 Hb_159679_010 Hb_159679_010 Hb_012253_010--Hb_159679_010 Hb_001623_210 Hb_001623_210 Hb_012253_010--Hb_001623_210 Hb_008768_030 Hb_008768_030 Hb_012253_010--Hb_008768_030 Hb_005438_010--Hb_159679_010 Hb_005438_010--Hb_011640_030 Hb_000098_320 Hb_000098_320 Hb_005438_010--Hb_000098_320 Hb_007336_030 Hb_007336_030 Hb_005438_010--Hb_007336_030 Hb_001534_010 Hb_001534_010 Hb_005438_010--Hb_001534_010 Hb_105712_010 Hb_105712_010 Hb_150751_010--Hb_105712_010 Hb_002943_030 Hb_002943_030 Hb_150751_010--Hb_002943_030 Hb_150751_010--Hb_159679_010 Hb_150751_010--Hb_008768_030 Hb_001150_030 Hb_001150_030 Hb_150751_010--Hb_001150_030 Hb_011640_030--Hb_000098_320 Hb_137133_010 Hb_137133_010 Hb_011640_030--Hb_137133_010 Hb_001243_010 Hb_001243_010 Hb_011640_030--Hb_001243_010 Hb_011640_030--Hb_001534_010 Hb_015322_040 Hb_015322_040 Hb_011640_030--Hb_015322_040 Hb_020096_020 Hb_020096_020 Hb_159679_010--Hb_020096_020 Hb_159679_010--Hb_007336_030 Hb_159679_010--Hb_015322_040 Hb_159679_010--Hb_001534_010 Hb_159679_010--Hb_000098_320 Hb_001638_210 Hb_001638_210 Hb_001623_210--Hb_001638_210 Hb_006018_030 Hb_006018_030 Hb_001623_210--Hb_006018_030 Hb_001623_210--Hb_159679_010 Hb_002836_080 Hb_002836_080 Hb_001623_210--Hb_002836_080 Hb_001623_210--Hb_005438_010 Hb_007904_140 Hb_007904_140 Hb_008768_030--Hb_007904_140 Hb_008768_030--Hb_015322_040 Hb_008768_030--Hb_001534_010 Hb_008768_030--Hb_000098_320 Hb_008768_030--Hb_001243_010 Hb_000008_180 Hb_000008_180 Hb_008768_030--Hb_000008_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00489795 0 0 0 0 0.00447185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0332887 0 0.0167664 0.003459 0

CAGE analysis