Hb_012258_020

Information

Type -
Description -
Location Contig12258: 22934-26593
Sequence    

Annotation

kegg
ID rcu:RCOM_1674960
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002509479.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID Q9M069
description Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2
trembl
ID B9RBE5
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_1674960 PE=3 SV=1
Gene Ontology
ID GO:0031225
description glucan endo- -beta-glucosidase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06852: 23041-26597
cDNA
(Sanger)
(ID:Location)		 013_P06.ab1: 23044-24124 , 018_F17.ab1: 23044-24117

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012258_020 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_000117_060 0.1306430216 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
3 Hb_005568_130 0.1317830415 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
4 Hb_041895_040 0.1370597074 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003637_020 0.1423888605 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000594_110 0.1602774305 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
7 Hb_001518_060 0.1631541918 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
8 Hb_003078_030 0.163948805 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
9 Hb_002431_010 0.1667649075 - - PREDICTED: uncharacterized protein LOC104599557 isoform X2 [Nelumbo nucifera]
10 Hb_003835_090 0.1670332701 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
11 Hb_003913_030 0.1687210682 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
12 Hb_000163_230 0.1690752673 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
13 Hb_011360_090 0.1705801067 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
14 Hb_002701_210 0.1711497795 - - Protein COBRA precursor, putative [Ricinus communis]
15 Hb_000805_040 0.1714074059 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_009040_010 0.171442569 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
17 Hb_006711_070 0.1720601396 - - hypothetical protein RCOM_1336320 [Ricinus communis]
18 Hb_009476_150 0.1753312972 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
19 Hb_002233_070 0.1775281644 - - unnamed protein product [Vitis vinifera]
20 Hb_055488_020 0.1782975689 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]

Gene co-expression network

sample Hb_012258_020 Hb_012258_020 Hb_000117_060 Hb_000117_060 Hb_012258_020--Hb_000117_060 Hb_005568_130 Hb_005568_130 Hb_012258_020--Hb_005568_130 Hb_041895_040 Hb_041895_040 Hb_012258_020--Hb_041895_040 Hb_003637_020 Hb_003637_020 Hb_012258_020--Hb_003637_020 Hb_000594_110 Hb_000594_110 Hb_012258_020--Hb_000594_110 Hb_001518_060 Hb_001518_060 Hb_012258_020--Hb_001518_060 Hb_006711_070 Hb_006711_070 Hb_000117_060--Hb_006711_070 Hb_000117_060--Hb_003637_020 Hb_185513_010 Hb_185513_010 Hb_000117_060--Hb_185513_010 Hb_001437_010 Hb_001437_010 Hb_000117_060--Hb_001437_010 Hb_138585_100 Hb_138585_100 Hb_000117_060--Hb_138585_100 Hb_003216_050 Hb_003216_050 Hb_005568_130--Hb_003216_050 Hb_001662_170 Hb_001662_170 Hb_005568_130--Hb_001662_170 Hb_000163_230 Hb_000163_230 Hb_005568_130--Hb_000163_230 Hb_002774_150 Hb_002774_150 Hb_005568_130--Hb_002774_150 Hb_004032_310 Hb_004032_310 Hb_005568_130--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_005568_130--Hb_003752_120 Hb_005394_010 Hb_005394_010 Hb_041895_040--Hb_005394_010 Hb_015026_040 Hb_015026_040 Hb_041895_040--Hb_015026_040 Hb_001246_160 Hb_001246_160 Hb_041895_040--Hb_001246_160 Hb_041895_040--Hb_000163_230 Hb_001769_110 Hb_001769_110 Hb_041895_040--Hb_001769_110 Hb_041895_040--Hb_000594_110 Hb_003637_020--Hb_185513_010 Hb_103788_010 Hb_103788_010 Hb_003637_020--Hb_103788_010 Hb_003637_020--Hb_003752_120 Hb_012725_040 Hb_012725_040 Hb_003637_020--Hb_012725_040 Hb_102437_010 Hb_102437_010 Hb_000594_110--Hb_102437_010 Hb_033327_010 Hb_033327_010 Hb_000594_110--Hb_033327_010 Hb_000340_560 Hb_000340_560 Hb_000594_110--Hb_000340_560 Hb_002311_150 Hb_002311_150 Hb_000594_110--Hb_002311_150 Hb_002233_080 Hb_002233_080 Hb_000594_110--Hb_002233_080 Hb_010315_100 Hb_010315_100 Hb_001518_060--Hb_010315_100 Hb_178793_010 Hb_178793_010 Hb_001518_060--Hb_178793_010 Hb_005724_050 Hb_005724_050 Hb_001518_060--Hb_005724_050 Hb_001518_060--Hb_041895_040 Hb_001518_060--Hb_000594_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.3429 132.77 56.4164 74.0516 24.067 20.7413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.02882 5.85257 2.14955 8.81451 9.8647

CAGE analysis