Hb_012262_030

Information

Type -
Description -
Location Contig12262: 38650-42608
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03570g
description hypothetical protein
nr
ID XP_012071721.1
description PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9M9Z2
description Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1
trembl
ID A0A067L1P8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04335 PE=3 SV=1
Gene Ontology
ID GO:0016021
description thylakoidal processing peptidase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06880: 38759-42562 , PASA_asmbl_06881: 38759-39601
cDNA
(Sanger)
(ID:Location)		 001_L22.ab1: 38759-39566 , 007_F03.ab1: 41458-42347 , 011_N03.ab1: 38759-39601 , 016_E14.ab1: 38760-39469 , 023_J15.ab1: 38759-39396 , 035_L05.ab1: 38759-39504 , 042_O01.ab1: 38759-39414 , 044_N22.ab1: 38760-39531 , 050_P21.ab1: 38760-39445

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012262_030 0.0 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
2 Hb_000227_160 0.0599924401 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
3 Hb_000023_300 0.0628444041 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
4 Hb_004994_180 0.0702465464 - - malic enzyme, putative [Ricinus communis]
5 Hb_189216_010 0.0727660697 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
6 Hb_008748_030 0.0741288883 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001454_230 0.0795013874 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
8 Hb_000705_230 0.0843652697 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
9 Hb_000029_190 0.0877798694 - - hypothetical protein CISIN_1g025338mg [Citrus sinensis]
10 Hb_005653_070 0.0878538201 - - K+ transport growth defect-like protein [Hevea brasiliensis]
11 Hb_172426_030 0.0880534906 - - acetylglucosaminyltransferase, putative [Ricinus communis]
12 Hb_006006_040 0.093354151 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
13 Hb_000964_030 0.0939165482 - - ADP/ATP carrier 2 [Theobroma cacao]
14 Hb_023344_150 0.0942359208 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
15 Hb_000069_640 0.0951386524 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
16 Hb_020178_040 0.0972167568 - - conserved hypothetical protein [Ricinus communis]
17 Hb_053709_050 0.0978646345 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_038574_010 0.0982015145 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
19 Hb_000367_090 0.0986503309 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
20 Hb_000120_810 0.0987095368 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]

Gene co-expression network

sample Hb_012262_030 Hb_012262_030 Hb_000227_160 Hb_000227_160 Hb_012262_030--Hb_000227_160 Hb_000023_300 Hb_000023_300 Hb_012262_030--Hb_000023_300 Hb_004994_180 Hb_004994_180 Hb_012262_030--Hb_004994_180 Hb_189216_010 Hb_189216_010 Hb_012262_030--Hb_189216_010 Hb_008748_030 Hb_008748_030 Hb_012262_030--Hb_008748_030 Hb_001454_230 Hb_001454_230 Hb_012262_030--Hb_001454_230 Hb_000227_160--Hb_008748_030 Hb_028487_160 Hb_028487_160 Hb_000227_160--Hb_028487_160 Hb_000367_090 Hb_000367_090 Hb_000227_160--Hb_000367_090 Hb_008289_040 Hb_008289_040 Hb_000227_160--Hb_008289_040 Hb_000029_190 Hb_000029_190 Hb_000227_160--Hb_000029_190 Hb_000023_300--Hb_000227_160 Hb_001097_040 Hb_001097_040 Hb_000023_300--Hb_001097_040 Hb_001051_070 Hb_001051_070 Hb_000023_300--Hb_001051_070 Hb_010672_020 Hb_010672_020 Hb_000023_300--Hb_010672_020 Hb_000023_300--Hb_008748_030 Hb_000705_230 Hb_000705_230 Hb_004994_180--Hb_000705_230 Hb_000638_130 Hb_000638_130 Hb_004994_180--Hb_000638_130 Hb_000510_170 Hb_000510_170 Hb_004994_180--Hb_000510_170 Hb_000120_810 Hb_000120_810 Hb_004994_180--Hb_000120_810 Hb_004994_180--Hb_189216_010 Hb_005563_070 Hb_005563_070 Hb_189216_010--Hb_005563_070 Hb_000603_160 Hb_000603_160 Hb_189216_010--Hb_000603_160 Hb_002471_090 Hb_002471_090 Hb_189216_010--Hb_002471_090 Hb_000778_010 Hb_000778_010 Hb_189216_010--Hb_000778_010 Hb_189216_010--Hb_008748_030 Hb_002272_030 Hb_002272_030 Hb_189216_010--Hb_002272_030 Hb_000012_310 Hb_000012_310 Hb_008748_030--Hb_000012_310 Hb_006452_120 Hb_006452_120 Hb_008748_030--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_008748_030--Hb_000574_450 Hb_008748_030--Hb_028487_160 Hb_008748_030--Hb_000778_010 Hb_001252_090 Hb_001252_090 Hb_001454_230--Hb_001252_090 Hb_000703_190 Hb_000703_190 Hb_001454_230--Hb_000703_190 Hb_000046_500 Hb_000046_500 Hb_001454_230--Hb_000046_500 Hb_011214_160 Hb_011214_160 Hb_001454_230--Hb_011214_160 Hb_001454_230--Hb_000023_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.237 42.8423 50.094 83.2882 14.2817 20.3581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.4867 32.5615 42.1196 47.9542 35.7778

CAGE analysis