Hb_012265_010

Information

Type -
Description -
Location Contig12265: 11984-13083
Sequence    

Annotation

kegg
ID cit:102614271
description uncharacterized LOC102614271
nr
ID KDO83259.1
description hypothetical protein CISIN_1g026883mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067GUH8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026883mg PE=4 SV=1
Gene Ontology
ID GO:0071704
description hypothetical protein CISIN_1g026883mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06883: 12133-30525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012265_010 0.0 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
2 Hb_003086_100 0.0691997821 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
3 Hb_001433_050 0.0744298071 - - 60S ribosomal protein L18, putative [Ricinus communis]
4 Hb_130291_010 0.0773262418 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
5 Hb_148930_010 0.0802427675 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
6 Hb_002835_320 0.0845765064 - - 60S ribosomal protein L27B [Hevea brasiliensis]
7 Hb_010172_030 0.087619498 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
8 Hb_003623_050 0.088794252 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010812_010 0.0923436517 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
10 Hb_000024_030 0.0926153139 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
11 Hb_003376_130 0.0926870633 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
12 Hb_000193_200 0.0927720414 - - rotamase, putative [Ricinus communis]
13 Hb_008847_020 0.0936036737 - - 40S ribosomal protein S17C [Hevea brasiliensis]
14 Hb_002107_120 0.0941691527 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
15 Hb_000085_330 0.0962762895 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
16 Hb_148200_010 0.09935957 - - hypothetical protein 33 [Hevea brasiliensis]
17 Hb_000865_070 0.0995591766 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
18 Hb_011161_050 0.1003758901 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
19 Hb_001769_100 0.1005910197 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
20 Hb_002781_020 0.1011640438 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012265_010 Hb_012265_010 Hb_003086_100 Hb_003086_100 Hb_012265_010--Hb_003086_100 Hb_001433_050 Hb_001433_050 Hb_012265_010--Hb_001433_050 Hb_130291_010 Hb_130291_010 Hb_012265_010--Hb_130291_010 Hb_148930_010 Hb_148930_010 Hb_012265_010--Hb_148930_010 Hb_002835_320 Hb_002835_320 Hb_012265_010--Hb_002835_320 Hb_010172_030 Hb_010172_030 Hb_012265_010--Hb_010172_030 Hb_003376_130 Hb_003376_130 Hb_003086_100--Hb_003376_130 Hb_003086_100--Hb_001433_050 Hb_001383_060 Hb_001383_060 Hb_003086_100--Hb_001383_060 Hb_002311_320 Hb_002311_320 Hb_003086_100--Hb_002311_320 Hb_010883_150 Hb_010883_150 Hb_003086_100--Hb_010883_150 Hb_001433_050--Hb_001383_060 Hb_000024_030 Hb_000024_030 Hb_001433_050--Hb_000024_030 Hb_148200_010 Hb_148200_010 Hb_001433_050--Hb_148200_010 Hb_003927_130 Hb_003927_130 Hb_001433_050--Hb_003927_130 Hb_007479_020 Hb_007479_020 Hb_001433_050--Hb_007479_020 Hb_001433_050--Hb_148930_010 Hb_000184_050 Hb_000184_050 Hb_130291_010--Hb_000184_050 Hb_130291_010--Hb_001433_050 Hb_130291_010--Hb_000024_030 Hb_000199_070 Hb_000199_070 Hb_130291_010--Hb_000199_070 Hb_000975_110 Hb_000975_110 Hb_130291_010--Hb_000975_110 Hb_148930_010--Hb_002835_320 Hb_001248_080 Hb_001248_080 Hb_148930_010--Hb_001248_080 Hb_148930_010--Hb_003376_130 Hb_148930_010--Hb_148200_010 Hb_003398_120 Hb_003398_120 Hb_148930_010--Hb_003398_120 Hb_000163_130 Hb_000163_130 Hb_002835_320--Hb_000163_130 Hb_009851_100 Hb_009851_100 Hb_002835_320--Hb_009851_100 Hb_003053_030 Hb_003053_030 Hb_002835_320--Hb_003053_030 Hb_000312_090 Hb_000312_090 Hb_002835_320--Hb_000312_090 Hb_002835_320--Hb_001433_050 Hb_002781_020 Hb_002781_020 Hb_010172_030--Hb_002781_020 Hb_002214_050 Hb_002214_050 Hb_010172_030--Hb_002214_050 Hb_000212_260 Hb_000212_260 Hb_010172_030--Hb_000212_260 Hb_002660_160 Hb_002660_160 Hb_010172_030--Hb_002660_160 Hb_000362_210 Hb_000362_210 Hb_010172_030--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_010172_030--Hb_000333_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4498 4.3334 7.16044 12.6232 24.209 44.0012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.5654 93.0614 41.674 30.3968 11.008

CAGE analysis