Hb_012286_010

Information

Type -
Description -
Location Contig12286: 5255-11583
Sequence    

Annotation

kegg
ID vvi:100252123
description eukaryotic translation initiation factor 3 subunit C
nr
ID XP_012086100.1
description PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
swissprot
ID O49160
description Eukaryotic translation initiation factor 3 subunit C OS=Arabidopsis thaliana GN=TIF3C1 PE=1 SV=2
trembl
ID A0A067K173
description Eukaryotic translation initiation factor 3 subunit C OS=Jatropha curcas GN=JCGZ_21043 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06925: 5261-11605 , PASA_asmbl_06927: 8230-8357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012286_010 0.0 - - PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Jatropha curcas]
2 Hb_002024_010 0.0850732516 - - hypothetical protein B456_003G0564002, partial [Gossypium raimondii]
3 Hb_002276_060 0.0925155083 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
4 Hb_004994_380 0.0981172647 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
5 Hb_002193_010 0.0994461726 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
6 Hb_008489_020 0.100431936 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
7 Hb_000170_190 0.1011793191 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
8 Hb_000010_180 0.1015229043 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
9 Hb_002909_050 0.1020835074 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000010_390 0.1035692929 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
11 Hb_000034_040 0.1050178718 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
12 Hb_015884_030 0.1069250698 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
13 Hb_006915_070 0.108586014 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
14 Hb_005470_020 0.1101036367 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
15 Hb_145915_010 0.1103777819 - - PREDICTED: uncharacterized protein LOC105630963 [Jatropha curcas]
16 Hb_000093_080 0.1110556622 - - hypothetical protein POPTR_0008s09730g [Populus trichocarpa]
17 Hb_000076_130 0.1124841986 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
18 Hb_001898_090 0.1126245044 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
19 Hb_002601_130 0.1137132247 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
20 Hb_010710_070 0.1156228593 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_012286_010 Hb_012286_010 Hb_002024_010 Hb_002024_010 Hb_012286_010--Hb_002024_010 Hb_002276_060 Hb_002276_060 Hb_012286_010--Hb_002276_060 Hb_004994_380 Hb_004994_380 Hb_012286_010--Hb_004994_380 Hb_002193_010 Hb_002193_010 Hb_012286_010--Hb_002193_010 Hb_008489_020 Hb_008489_020 Hb_012286_010--Hb_008489_020 Hb_000170_190 Hb_000170_190 Hb_012286_010--Hb_000170_190 Hb_002024_010--Hb_004994_380 Hb_002084_020 Hb_002084_020 Hb_002024_010--Hb_002084_020 Hb_010710_070 Hb_010710_070 Hb_002024_010--Hb_010710_070 Hb_012799_030 Hb_012799_030 Hb_002024_010--Hb_012799_030 Hb_001322_140 Hb_001322_140 Hb_002024_010--Hb_001322_140 Hb_002276_060--Hb_000170_190 Hb_000034_040 Hb_000034_040 Hb_002276_060--Hb_000034_040 Hb_003001_150 Hb_003001_150 Hb_002276_060--Hb_003001_150 Hb_002276_060--Hb_002193_010 Hb_005181_110 Hb_005181_110 Hb_002276_060--Hb_005181_110 Hb_004994_380--Hb_010710_070 Hb_000076_130 Hb_000076_130 Hb_004994_380--Hb_000076_130 Hb_001014_160 Hb_001014_160 Hb_004994_380--Hb_001014_160 Hb_188063_020 Hb_188063_020 Hb_004994_380--Hb_188063_020 Hb_001141_020 Hb_001141_020 Hb_004994_380--Hb_001141_020 Hb_004963_030 Hb_004963_030 Hb_004994_380--Hb_004963_030 Hb_002193_010--Hb_000170_190 Hb_003406_040 Hb_003406_040 Hb_002193_010--Hb_003406_040 Hb_002193_010--Hb_003001_150 Hb_000729_050 Hb_000729_050 Hb_002193_010--Hb_000729_050 Hb_005488_060 Hb_005488_060 Hb_008489_020--Hb_005488_060 Hb_008489_020--Hb_000170_190 Hb_008489_020--Hb_002084_020 Hb_002601_130 Hb_002601_130 Hb_008489_020--Hb_002601_130 Hb_006915_070 Hb_006915_070 Hb_008489_020--Hb_006915_070 Hb_000170_190--Hb_002601_130 Hb_000300_580 Hb_000300_580 Hb_000170_190--Hb_000300_580 Hb_000010_180 Hb_000010_180 Hb_000170_190--Hb_000010_180 Hb_000768_190 Hb_000768_190 Hb_000170_190--Hb_000768_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
95.88 33.1115 33.2806 24.3899 77.5188 117.9
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.1827 29.3005 58.6669 40.3197 102.487

CAGE analysis