Hb_012286_030

Information

Type transcription factor
Description TF Family: MED7
Location Contig12286: 17321-20256
Sequence    

Annotation

kegg
ID sot:102597158
description mediator of RNA polymerase II transcription subunit 7a-like
nr
ID XP_004238356.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
swissprot
ID Q9LZD7
description Mediator of RNA polymerase II transcription subunit 7b OS=Arabidopsis thaliana GN=MED7B PE=1 SV=1
trembl
ID K4BVM2
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc04g081430.2 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 7a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06930: 17276-20227
cDNA
(Sanger)
(ID:Location)		 046_D12.ab1: 17276-20126

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012286_030 0.0 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
2 Hb_000527_060 0.0504464924 - - Protein C20orf11, putative [Ricinus communis]
3 Hb_000580_090 0.0581251008 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
4 Hb_004109_170 0.0588615057 - - PREDICTED: probable ribokinase [Jatropha curcas]
5 Hb_000676_180 0.0685603913 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
6 Hb_004116_190 0.0696046686 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
7 Hb_005846_040 0.0704601983 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
8 Hb_000656_240 0.0709025655 - - proteasome subunit alpha type, putative [Ricinus communis]
9 Hb_004108_070 0.0709614033 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
10 Hb_011344_210 0.0728467584 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
11 Hb_001123_130 0.0728803546 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
12 Hb_005725_250 0.0730340348 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
13 Hb_001195_480 0.0731739659 - - cop9 complex subunit, putative [Ricinus communis]
14 Hb_000336_150 0.0736605017 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
15 Hb_118419_010 0.0759453825 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
16 Hb_000815_320 0.0767112373 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
17 Hb_000373_070 0.0774299278 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
18 Hb_000367_160 0.0776259506 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
19 Hb_075449_010 0.0798859521 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
20 Hb_000205_090 0.0802379469 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]

Gene co-expression network

sample Hb_012286_030 Hb_012286_030 Hb_000527_060 Hb_000527_060 Hb_012286_030--Hb_000527_060 Hb_000580_090 Hb_000580_090 Hb_012286_030--Hb_000580_090 Hb_004109_170 Hb_004109_170 Hb_012286_030--Hb_004109_170 Hb_000676_180 Hb_000676_180 Hb_012286_030--Hb_000676_180 Hb_004116_190 Hb_004116_190 Hb_012286_030--Hb_004116_190 Hb_005846_040 Hb_005846_040 Hb_012286_030--Hb_005846_040 Hb_001123_130 Hb_001123_130 Hb_000527_060--Hb_001123_130 Hb_000261_140 Hb_000261_140 Hb_000527_060--Hb_000261_140 Hb_000115_220 Hb_000115_220 Hb_000527_060--Hb_000115_220 Hb_004143_150 Hb_004143_150 Hb_000527_060--Hb_004143_150 Hb_000920_110 Hb_000920_110 Hb_000527_060--Hb_000920_110 Hb_000580_090--Hb_004109_170 Hb_000656_240 Hb_000656_240 Hb_000580_090--Hb_000656_240 Hb_000580_090--Hb_004116_190 Hb_000815_320 Hb_000815_320 Hb_000580_090--Hb_000815_320 Hb_001105_030 Hb_001105_030 Hb_000580_090--Hb_001105_030 Hb_000205_090 Hb_000205_090 Hb_004109_170--Hb_000205_090 Hb_000260_030 Hb_000260_030 Hb_004109_170--Hb_000260_030 Hb_118419_010 Hb_118419_010 Hb_004109_170--Hb_118419_010 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240 Hb_000676_180--Hb_004116_190 Hb_000479_090 Hb_000479_090 Hb_000676_180--Hb_000479_090 Hb_005725_250 Hb_005725_250 Hb_000676_180--Hb_005725_250 Hb_000676_180--Hb_005846_040 Hb_004635_100 Hb_004635_100 Hb_000676_180--Hb_004635_100 Hb_001633_050 Hb_001633_050 Hb_004116_190--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_004116_190--Hb_002995_020 Hb_004116_190--Hb_000656_240 Hb_000020_060 Hb_000020_060 Hb_004116_190--Hb_000020_060 Hb_004116_190--Hb_005846_040 Hb_003151_040 Hb_003151_040 Hb_005846_040--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1593 17.1393 22.9813 19.1272 23.2911 17.5631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.1595 41.6863 27.6037 12.1751 13.9636

CAGE analysis