Hb_012286_050

Information

Type -
Description -
Location Contig12286: 36898-49238
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05870g
description Syntaxin 61 family protein
nr
ID XP_012090854.1
description PREDICTED: syntaxin-61 [Jatropha curcas]
swissprot
ID Q946Y7
description Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1
trembl
ID A0A067JDJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03045 PE=4 SV=1
Gene Ontology
ID GO:0005802
description syntaxin-61

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012286_050 0.0 - - PREDICTED: syntaxin-61 [Jatropha curcas]
2 Hb_000307_200 0.0922251884 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
3 Hb_002023_020 0.1012456917 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
4 Hb_006455_090 0.1024418987 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
5 Hb_000364_150 0.1031649199 - - -
6 Hb_020902_010 0.1057221193 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
7 Hb_039253_010 0.1084848908 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
8 Hb_000424_240 0.1101683082 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
9 Hb_036034_010 0.1105552305 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000671_100 0.111107274 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
11 Hb_071736_010 0.113672115 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
12 Hb_006455_110 0.1154182398 - - bromodomain-containing protein, putative [Ricinus communis]
13 Hb_000914_070 0.1189317654 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
14 Hb_005883_050 0.1209567399 - - PREDICTED: transportin-3 [Jatropha curcas]
15 Hb_000696_350 0.1257689745 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
16 Hb_009558_020 0.1292549168 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
17 Hb_000679_150 0.1301417826 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
18 Hb_001673_010 0.1304331482 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
19 Hb_010298_010 0.1308537216 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
20 Hb_014568_030 0.1309405557 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]

Gene co-expression network

sample Hb_012286_050 Hb_012286_050 Hb_000307_200 Hb_000307_200 Hb_012286_050--Hb_000307_200 Hb_002023_020 Hb_002023_020 Hb_012286_050--Hb_002023_020 Hb_006455_090 Hb_006455_090 Hb_012286_050--Hb_006455_090 Hb_000364_150 Hb_000364_150 Hb_012286_050--Hb_000364_150 Hb_020902_010 Hb_020902_010 Hb_012286_050--Hb_020902_010 Hb_039253_010 Hb_039253_010 Hb_012286_050--Hb_039253_010 Hb_003434_060 Hb_003434_060 Hb_000307_200--Hb_003434_060 Hb_002046_040 Hb_002046_040 Hb_000307_200--Hb_002046_040 Hb_000077_050 Hb_000077_050 Hb_000307_200--Hb_000077_050 Hb_028900_020 Hb_028900_020 Hb_000307_200--Hb_028900_020 Hb_000390_060 Hb_000390_060 Hb_000307_200--Hb_000390_060 Hb_000045_070 Hb_000045_070 Hb_000307_200--Hb_000045_070 Hb_002023_020--Hb_039253_010 Hb_003656_140 Hb_003656_140 Hb_002023_020--Hb_003656_140 Hb_137403_010 Hb_137403_010 Hb_002023_020--Hb_137403_010 Hb_002023_020--Hb_000364_150 Hb_002023_020--Hb_000307_200 Hb_071736_010 Hb_071736_010 Hb_002023_020--Hb_071736_010 Hb_006455_080 Hb_006455_080 Hb_006455_090--Hb_006455_080 Hb_006455_110 Hb_006455_110 Hb_006455_090--Hb_006455_110 Hb_003711_040 Hb_003711_040 Hb_006455_090--Hb_003711_040 Hb_006455_090--Hb_000307_200 Hb_006455_090--Hb_020902_010 Hb_000914_070 Hb_000914_070 Hb_000364_150--Hb_000914_070 Hb_000364_150--Hb_137403_010 Hb_000364_150--Hb_039253_010 Hb_004055_140 Hb_004055_140 Hb_000364_150--Hb_004055_140 Hb_009117_030 Hb_009117_030 Hb_000364_150--Hb_009117_030 Hb_036034_010 Hb_036034_010 Hb_020902_010--Hb_036034_010 Hb_000878_130 Hb_000878_130 Hb_020902_010--Hb_000878_130 Hb_020902_010--Hb_000307_200 Hb_014568_030 Hb_014568_030 Hb_020902_010--Hb_014568_030 Hb_004735_010 Hb_004735_010 Hb_020902_010--Hb_004735_010 Hb_002805_070 Hb_002805_070 Hb_039253_010--Hb_002805_070 Hb_039253_010--Hb_003656_140 Hb_001102_150 Hb_001102_150 Hb_039253_010--Hb_001102_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.4178 2.55904 2.10053 5.43046 11.9014 38.9182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8031 7.61548 13.3762 6.91808 5.72895

CAGE analysis