Hb_012286_060

Information

Type transcription factor
Description TF Family: SET
Location Contig12286: 58113-70457
Sequence    

Annotation

kegg
ID cic:CICLE_v10013489mg
description hypothetical protein
nr
ID CBI29967.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9FG08
description Histone-lysine N-methyltransferase ATXR4 OS=Arabidopsis thaliana GN=ATXR4 PE=2 SV=2
trembl
ID D7TI91
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g07110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06937: 58246-62640 , PASA_asmbl_06938: 63381-70735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012286_060 0.0 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
2 Hb_000030_020 0.1139494483 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
3 Hb_000963_050 0.1155625312 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
4 Hb_005348_150 0.12463441 - - PREDICTED: actin-100-like [Jatropha curcas]
5 Hb_008511_040 0.1264208046 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_118939_010 0.1283271589 - - protein binding protein, putative [Ricinus communis]
7 Hb_143629_120 0.1286193438 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
8 Hb_001188_050 0.1295985044 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002026_020 0.1328401998 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
10 Hb_000049_270 0.1364330519 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
11 Hb_000008_200 0.1410373206 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
12 Hb_000599_330 0.1427187185 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
13 Hb_118283_010 0.1449538077 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006829_070 0.1452458963 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
15 Hb_017439_010 0.1453163298 - - putative actin-97 protein [Linum usitatissimum]
16 Hb_001579_300 0.1461941526 - - PREDICTED: probable polygalacturonase At1g80170 [Jatropha curcas]
17 Hb_001862_050 0.1481306313 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
18 Hb_010889_010 0.1485828061 - - PREDICTED: myosin-12 [Jatropha curcas]
19 Hb_003992_280 0.1487054317 - - PREDICTED: uncharacterized protein LOC105117987 [Populus euphratica]
20 Hb_186247_010 0.1498539549 - - PREDICTED: uridine 5'-monophosphate synthase-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_012286_060 Hb_012286_060 Hb_000030_020 Hb_000030_020 Hb_012286_060--Hb_000030_020 Hb_000963_050 Hb_000963_050 Hb_012286_060--Hb_000963_050 Hb_005348_150 Hb_005348_150 Hb_012286_060--Hb_005348_150 Hb_008511_040 Hb_008511_040 Hb_012286_060--Hb_008511_040 Hb_118939_010 Hb_118939_010 Hb_012286_060--Hb_118939_010 Hb_143629_120 Hb_143629_120 Hb_012286_060--Hb_143629_120 Hb_002026_020 Hb_002026_020 Hb_000030_020--Hb_002026_020 Hb_000165_090 Hb_000165_090 Hb_000030_020--Hb_000165_090 Hb_000030_020--Hb_005348_150 Hb_000599_330 Hb_000599_330 Hb_000030_020--Hb_000599_330 Hb_005245_140 Hb_005245_140 Hb_000030_020--Hb_005245_140 Hb_000274_050 Hb_000274_050 Hb_000963_050--Hb_000274_050 Hb_001188_050 Hb_001188_050 Hb_000963_050--Hb_001188_050 Hb_020805_040 Hb_020805_040 Hb_000963_050--Hb_020805_040 Hb_000963_050--Hb_143629_120 Hb_118283_010 Hb_118283_010 Hb_000963_050--Hb_118283_010 Hb_005348_150--Hb_118939_010 Hb_119583_020 Hb_119583_020 Hb_005348_150--Hb_119583_020 Hb_005348_150--Hb_000599_330 Hb_000388_080 Hb_000388_080 Hb_005348_150--Hb_000388_080 Hb_006133_020 Hb_006133_020 Hb_008511_040--Hb_006133_020 Hb_000008_200 Hb_000008_200 Hb_008511_040--Hb_000008_200 Hb_000069_300 Hb_000069_300 Hb_008511_040--Hb_000069_300 Hb_000227_400 Hb_000227_400 Hb_008511_040--Hb_000227_400 Hb_001922_110 Hb_001922_110 Hb_008511_040--Hb_001922_110 Hb_001123_310 Hb_001123_310 Hb_008511_040--Hb_001123_310 Hb_007044_090 Hb_007044_090 Hb_118939_010--Hb_007044_090 Hb_001579_300 Hb_001579_300 Hb_118939_010--Hb_001579_300 Hb_006925_050 Hb_006925_050 Hb_118939_010--Hb_006925_050 Hb_007483_060 Hb_007483_060 Hb_118939_010--Hb_007483_060 Hb_008686_010 Hb_008686_010 Hb_143629_120--Hb_008686_010 Hb_001195_550 Hb_001195_550 Hb_143629_120--Hb_001195_550 Hb_143629_120--Hb_000599_330 Hb_015941_010 Hb_015941_010 Hb_143629_120--Hb_015941_010 Hb_169893_010 Hb_169893_010 Hb_143629_120--Hb_169893_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.791277 2.41858 9.74912 13.1011 0.879326 0.773263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.476579 0.589263 0.372426 0.67492 3.62223

CAGE analysis