Hb_012295_020

Information

Type -
Description -
Location Contig12295: 13963-18561
Sequence    

Annotation

kegg
ID tcc:TCM_013764
description DNA/RNA polymerases superfamily protein
nr
ID XP_009772753.1
description PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A5CAD1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016917 PE=4 SV=1
Gene Ontology
ID GO:0046872
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012295_020 0.0 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
2 Hb_012071_010 0.0090278036 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
3 Hb_000065_050 0.1227719052 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_032531_010 0.1255808245 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_001519_210 0.138175283 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
6 Hb_050334_010 0.1529363953 - - -
7 Hb_155556_010 0.1626877005 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
8 Hb_000940_190 0.1841802471 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
9 Hb_099723_010 0.1890495425 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
10 Hb_002092_040 0.1985017296 - - PREDICTED: protein YLS3 [Jatropha curcas]
11 Hb_065943_010 0.2077504655 - - -
12 Hb_001652_110 0.2103486697 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
13 Hb_004212_040 0.2158930623 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_006157_050 0.218984988 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_002571_090 0.2231976784 - - -
16 Hb_001780_010 0.2326603534 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
17 Hb_005007_040 0.2339802293 - - hypothetical protein VITISV_032357 [Vitis vinifera]
18 Hb_043792_020 0.2407770647 - - Retrotransposon gag protein [Medicago truncatula]
19 Hb_002869_070 0.2479822592 - - -
20 Hb_002473_140 0.2529516152 - - -

Gene co-expression network

sample Hb_012295_020 Hb_012295_020 Hb_012071_010 Hb_012071_010 Hb_012295_020--Hb_012071_010 Hb_000065_050 Hb_000065_050 Hb_012295_020--Hb_000065_050 Hb_032531_010 Hb_032531_010 Hb_012295_020--Hb_032531_010 Hb_001519_210 Hb_001519_210 Hb_012295_020--Hb_001519_210 Hb_050334_010 Hb_050334_010 Hb_012295_020--Hb_050334_010 Hb_155556_010 Hb_155556_010 Hb_012295_020--Hb_155556_010 Hb_012071_010--Hb_000065_050 Hb_012071_010--Hb_032531_010 Hb_012071_010--Hb_001519_210 Hb_012071_010--Hb_155556_010 Hb_012071_010--Hb_050334_010 Hb_001652_110 Hb_001652_110 Hb_000065_050--Hb_001652_110 Hb_002571_090 Hb_002571_090 Hb_000065_050--Hb_002571_090 Hb_000574_550 Hb_000574_550 Hb_000065_050--Hb_000574_550 Hb_000065_050--Hb_032531_010 Hb_000940_190 Hb_000940_190 Hb_032531_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_032531_010--Hb_099723_010 Hb_032531_010--Hb_050334_010 Hb_065943_010 Hb_065943_010 Hb_032531_010--Hb_065943_010 Hb_006157_050 Hb_006157_050 Hb_032531_010--Hb_006157_050 Hb_001519_210--Hb_050334_010 Hb_043792_020 Hb_043792_020 Hb_001519_210--Hb_043792_020 Hb_001519_210--Hb_032531_010 Hb_002869_070 Hb_002869_070 Hb_001519_210--Hb_002869_070 Hb_050334_010--Hb_000940_190 Hb_050334_010--Hb_099723_010 Hb_050334_010--Hb_002869_070 Hb_050334_010--Hb_065943_010 Hb_001780_010 Hb_001780_010 Hb_155556_010--Hb_001780_010 Hb_000920_070 Hb_000920_070 Hb_155556_010--Hb_000920_070 Hb_001524_020 Hb_001524_020 Hb_155556_010--Hb_001524_020 Hb_155556_010--Hb_001519_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.041456 0.0350628 0.0461763

CAGE analysis