Hb_012305_020

Information

Type -
Description -
Location Contig12305: 13383-14815
Sequence    

Annotation

kegg
ID vvi:100232986
description class I beta-1,3-glucanase
nr
ID AEV41413.1
description beta-1,3-glucanase [Hevea brasiliensis]
swissprot
ID P52407
description Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2
trembl
ID G9G7S0
description Beta-1,3-glucanase OS=Hevea brasiliensis GN=Gln4 PE=3 SV=1
Gene Ontology
ID GO:0005618
description beta- -glucanase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012305_020 0.0 - - beta-1,3-glucanase [Hevea brasiliensis]
2 Hb_061383_010 0.0914366961 - - beta-1,3-glucanase [Hevea brasiliensis]
3 Hb_001085_180 0.1312432603 - - conserved hypothetical protein [Ricinus communis]
4 Hb_086692_020 0.1369396095 - - PREDICTED: protein kinase APK1B, chloroplastic-like [Jatropha curcas]
5 Hb_183612_090 0.1733221445 - - -
6 Hb_001266_030 0.2014810762 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
7 Hb_000062_300 0.2017656845 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
8 Hb_001396_090 0.2025902726 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
9 Hb_038134_010 0.205895244 - - -
10 Hb_002150_050 0.206109338 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000045_210 0.2082334429 - - -
12 Hb_004968_070 0.2128304618 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000258_180 0.2235614118 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
14 Hb_000012_070 0.2237245238 - - cytochrome P450, putative [Ricinus communis]
15 Hb_027892_040 0.2253741402 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
16 Hb_044653_060 0.2271039573 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
17 Hb_010589_050 0.2296820172 - - -
18 Hb_014497_080 0.2307251376 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
19 Hb_003913_050 0.238187194 - - 60S ribosomal protein L27B [Hevea brasiliensis]
20 Hb_000352_180 0.2387280256 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012305_020 Hb_012305_020 Hb_061383_010 Hb_061383_010 Hb_012305_020--Hb_061383_010 Hb_001085_180 Hb_001085_180 Hb_012305_020--Hb_001085_180 Hb_086692_020 Hb_086692_020 Hb_012305_020--Hb_086692_020 Hb_183612_090 Hb_183612_090 Hb_012305_020--Hb_183612_090 Hb_001266_030 Hb_001266_030 Hb_012305_020--Hb_001266_030 Hb_000062_300 Hb_000062_300 Hb_012305_020--Hb_000062_300 Hb_061383_010--Hb_086692_020 Hb_002150_050 Hb_002150_050 Hb_061383_010--Hb_002150_050 Hb_001396_090 Hb_001396_090 Hb_061383_010--Hb_001396_090 Hb_038134_010 Hb_038134_010 Hb_061383_010--Hb_038134_010 Hb_061383_010--Hb_183612_090 Hb_001085_180--Hb_183612_090 Hb_004968_070 Hb_004968_070 Hb_001085_180--Hb_004968_070 Hb_000284_190 Hb_000284_190 Hb_001085_180--Hb_000284_190 Hb_001085_180--Hb_061383_010 Hb_032202_250 Hb_032202_250 Hb_001085_180--Hb_032202_250 Hb_003398_140 Hb_003398_140 Hb_086692_020--Hb_003398_140 Hb_086692_020--Hb_001266_030 Hb_012053_010 Hb_012053_010 Hb_086692_020--Hb_012053_010 Hb_086692_020--Hb_001396_090 Hb_003060_040 Hb_003060_040 Hb_183612_090--Hb_003060_040 Hb_003913_050 Hb_003913_050 Hb_183612_090--Hb_003913_050 Hb_091433_030 Hb_091433_030 Hb_183612_090--Hb_091433_030 Hb_044653_060 Hb_044653_060 Hb_001266_030--Hb_044653_060 Hb_001266_030--Hb_012053_010 Hb_000045_210 Hb_000045_210 Hb_001266_030--Hb_000045_210 Hb_027892_040 Hb_027892_040 Hb_001266_030--Hb_027892_040 Hb_000431_160 Hb_000431_160 Hb_001266_030--Hb_000431_160 Hb_000617_110 Hb_000617_110 Hb_001266_030--Hb_000617_110 Hb_014497_080 Hb_014497_080 Hb_000062_300--Hb_014497_080 Hb_003732_040 Hb_003732_040 Hb_000062_300--Hb_003732_040 Hb_042871_010 Hb_042871_010 Hb_000062_300--Hb_042871_010 Hb_000012_070 Hb_000012_070 Hb_000062_300--Hb_000012_070 Hb_033834_050 Hb_033834_050 Hb_000062_300--Hb_033834_050 Hb_003891_080 Hb_003891_080 Hb_000062_300--Hb_003891_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.448094 0 0.280929 1.57959 2.97356 4.17821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.20978 93.7406 13.5826 10.7881 0.828605

CAGE analysis