Hb_012305_040

Information

Type -
Description -
Location Contig12305: 33963-34622
Sequence    

Annotation

kegg
ID rcu:RCOM_1000040
description DNA-directed RNA polymerase II, putative
nr
ID XP_012084056.1
description PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
swissprot
ID Q8L5V0
description DNA-directed RNA polymerases II, IV and V subunit 9B OS=Arabidopsis thaliana GN=NRPB9B PE=1 SV=1
trembl
ID A0A067JYM8
description DNA-directed RNA polymerase subunit OS=Jatropha curcas GN=JCGZ_18978 PE=3 SV=1
Gene Ontology
ID GO:0000418
description dna-directed rna polymerases iv and v subunit 9b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07008: 35592-37143 , PASA_asmbl_07009: 35598-37088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012305_040 0.0 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
2 Hb_004662_010 0.1507369888 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
3 Hb_000176_120 0.15187845 - - seryl-tRNA synthetase, putative [Ricinus communis]
4 Hb_000107_140 0.1537147902 - - -
5 Hb_073339_010 0.1554004406 - - hypothetical protein 30 [Hevea brasiliensis]
6 Hb_144898_010 0.155500424 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
7 Hb_004241_040 0.1585141564 - - -
8 Hb_000996_170 0.1597633455 - - unknown [Glycine max]
9 Hb_005054_070 0.1650422957 - - unnamed protein product [Vitis vinifera]
10 Hb_000001_040 0.1677291549 - - unnamed protein product [Coffea canephora]
11 Hb_004117_180 0.1704119077 - - -
12 Hb_001976_050 0.1706671889 - - PREDICTED: protein SKIP34 [Jatropha curcas]
13 Hb_073367_010 0.1719382939 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
14 Hb_010504_030 0.1750834229 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
15 Hb_058381_010 0.1772006697 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
16 Hb_001824_020 0.1773577482 - - nucleotide binding protein, putative [Ricinus communis]
17 Hb_005367_010 0.178259858 - - -
18 Hb_000265_130 0.1788437821 - - -
19 Hb_005714_130 0.1791028198 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
20 Hb_000622_100 0.1796178392 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]

Gene co-expression network

sample Hb_012305_040 Hb_012305_040 Hb_004662_010 Hb_004662_010 Hb_012305_040--Hb_004662_010 Hb_000176_120 Hb_000176_120 Hb_012305_040--Hb_000176_120 Hb_000107_140 Hb_000107_140 Hb_012305_040--Hb_000107_140 Hb_073339_010 Hb_073339_010 Hb_012305_040--Hb_073339_010 Hb_144898_010 Hb_144898_010 Hb_012305_040--Hb_144898_010 Hb_004241_040 Hb_004241_040 Hb_012305_040--Hb_004241_040 Hb_181320_010 Hb_181320_010 Hb_004662_010--Hb_181320_010 Hb_004662_010--Hb_004241_040 Hb_004662_010--Hb_144898_010 Hb_175612_010 Hb_175612_010 Hb_004662_010--Hb_175612_010 Hb_005217_020 Hb_005217_020 Hb_004662_010--Hb_005217_020 Hb_005054_070 Hb_005054_070 Hb_000176_120--Hb_005054_070 Hb_006487_060 Hb_006487_060 Hb_000176_120--Hb_006487_060 Hb_152554_010 Hb_152554_010 Hb_000176_120--Hb_152554_010 Hb_000001_040 Hb_000001_040 Hb_000176_120--Hb_000001_040 Hb_010504_030 Hb_010504_030 Hb_000176_120--Hb_010504_030 Hb_136731_010 Hb_136731_010 Hb_000176_120--Hb_136731_010 Hb_000107_140--Hb_144898_010 Hb_000622_100 Hb_000622_100 Hb_000107_140--Hb_000622_100 Hb_073367_010 Hb_073367_010 Hb_000107_140--Hb_073367_010 Hb_011174_010 Hb_011174_010 Hb_000107_140--Hb_011174_010 Hb_004117_180 Hb_004117_180 Hb_000107_140--Hb_004117_180 Hb_004607_120 Hb_004607_120 Hb_000107_140--Hb_004607_120 Hb_000035_130 Hb_000035_130 Hb_073339_010--Hb_000035_130 Hb_005965_010 Hb_005965_010 Hb_073339_010--Hb_005965_010 Hb_006455_110 Hb_006455_110 Hb_073339_010--Hb_006455_110 Hb_001976_050 Hb_001976_050 Hb_073339_010--Hb_001976_050 Hb_006723_020 Hb_006723_020 Hb_073339_010--Hb_006723_020 Hb_012807_080 Hb_012807_080 Hb_073339_010--Hb_012807_080 Hb_144898_010--Hb_181320_010 Hb_005305_060 Hb_005305_060 Hb_144898_010--Hb_005305_060 Hb_001722_020 Hb_001722_020 Hb_144898_010--Hb_001722_020 Hb_144898_010--Hb_005054_070 Hb_144898_010--Hb_012807_080 Hb_032496_030 Hb_032496_030 Hb_004241_040--Hb_032496_030 Hb_004241_040--Hb_073367_010 Hb_004241_040--Hb_000622_100 Hb_025236_040 Hb_025236_040 Hb_004241_040--Hb_025236_040 Hb_004241_040--Hb_005054_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.42831 0.759717 0.313331 2.01756 1.59993 5.97892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3005 1.80733 0.282335 0.551004 0

CAGE analysis