Hb_012305_050

Information

Type -
Description -
Location Contig12305: 35836-36609
Sequence    

Annotation

kegg
ID rcu:RCOM_1000030
description zinc finger protein, putative
nr
ID CDO98779.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q5EB97
description Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus GN=Zcchc10 PE=2 SV=2
trembl
ID A0A068TS56
description Coffea canephora DH200=94 genomic scaffold, scaffold_3 OS=Coffea canephora GN=GSCOC_T00025699001 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger cchc domain-containing protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07008: 35592-37143 , PASA_asmbl_07009: 35598-37088 , PASA_asmbl_07010: 36739-36986
cDNA
(Sanger)
(ID:Location)		 027_E15.ab1: 36092-37142

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012305_050 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_003847_080 0.0480530359 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
3 Hb_004128_190 0.0659403861 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
4 Hb_022250_130 0.0767913075 - - inositol hexaphosphate kinase, putative [Ricinus communis]
5 Hb_000245_130 0.0816859376 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
6 Hb_185830_020 0.0822194557 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_000347_200 0.0868320037 - - lsm1, putative [Ricinus communis]
8 Hb_001124_210 0.0873421985 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001454_140 0.0882134971 - - protein arginine n-methyltransferase, putative [Ricinus communis]
10 Hb_002078_150 0.0898946319 - - protein with unknown function [Ricinus communis]
11 Hb_006332_010 0.0902267139 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
12 Hb_000700_110 0.0911061244 - - Vesicle-associated membrane protein, putative [Ricinus communis]
13 Hb_050455_010 0.092934646 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]
14 Hb_004055_140 0.0936214462 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
15 Hb_000620_080 0.0936512089 - - hypothetical protein F775_32679 [Aegilops tauschii]
16 Hb_000363_500 0.0939098962 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
17 Hb_002217_310 0.0950251969 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
18 Hb_002374_160 0.0960666638 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
19 Hb_137403_010 0.0977508916 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
20 Hb_021238_050 0.0984778044 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012305_050 Hb_012305_050 Hb_003847_080 Hb_003847_080 Hb_012305_050--Hb_003847_080 Hb_004128_190 Hb_004128_190 Hb_012305_050--Hb_004128_190 Hb_022250_130 Hb_022250_130 Hb_012305_050--Hb_022250_130 Hb_000245_130 Hb_000245_130 Hb_012305_050--Hb_000245_130 Hb_185830_020 Hb_185830_020 Hb_012305_050--Hb_185830_020 Hb_000347_200 Hb_000347_200 Hb_012305_050--Hb_000347_200 Hb_003847_080--Hb_004128_190 Hb_003847_080--Hb_185830_020 Hb_001124_210 Hb_001124_210 Hb_003847_080--Hb_001124_210 Hb_002078_150 Hb_002078_150 Hb_003847_080--Hb_002078_150 Hb_000363_500 Hb_000363_500 Hb_003847_080--Hb_000363_500 Hb_004128_190--Hb_002078_150 Hb_004128_190--Hb_000245_130 Hb_000103_090 Hb_000103_090 Hb_004128_190--Hb_000103_090 Hb_000024_080 Hb_000024_080 Hb_004128_190--Hb_000024_080 Hb_022250_130--Hb_185830_020 Hb_000103_180 Hb_000103_180 Hb_022250_130--Hb_000103_180 Hb_022250_130--Hb_003847_080 Hb_006332_010 Hb_006332_010 Hb_022250_130--Hb_006332_010 Hb_010691_060 Hb_010691_060 Hb_022250_130--Hb_010691_060 Hb_000032_290 Hb_000032_290 Hb_000245_130--Hb_000032_290 Hb_000245_130--Hb_003847_080 Hb_005333_070 Hb_005333_070 Hb_000245_130--Hb_005333_070 Hb_002374_160 Hb_002374_160 Hb_000245_130--Hb_002374_160 Hb_000245_130--Hb_002078_150 Hb_185830_020--Hb_010691_060 Hb_002982_040 Hb_002982_040 Hb_185830_020--Hb_002982_040 Hb_000956_030 Hb_000956_030 Hb_185830_020--Hb_000956_030 Hb_185830_020--Hb_000103_180 Hb_000173_340 Hb_000173_340 Hb_000347_200--Hb_000173_340 Hb_000700_110 Hb_000700_110 Hb_000347_200--Hb_000700_110 Hb_006198_080 Hb_006198_080 Hb_000347_200--Hb_006198_080 Hb_003092_030 Hb_003092_030 Hb_000347_200--Hb_003092_030 Hb_000347_200--Hb_000024_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.607 77.9535 31.9564 131.202 166.45 347.875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
230.414 213.329 162.395 132.921 51.6976

CAGE analysis