Hb_012305_120

Information

Type -
Description -
Location Contig12305: 80361-80862
Sequence    

Annotation

kegg
ID gmx:100777189
description 60S ribosomal protein L29-1-like
nr
ID XP_003529537.1
description PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
swissprot
ID Q9M7X7
description 60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1
trembl
ID A0A0B2PUR5
description 60S ribosomal protein L29-1 OS=Glycine soja GN=glysoja_004335 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l29-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07017: 80152-80863
cDNA
(Sanger)
(ID:Location)		 002_E05.ab1: 80204-80852 , 002_J13.ab1: 80212-80863 , 008_H15.ab1: 80205-80867 , 015_O20.ab1: 80198-80863 , 033_J10.ab1: 80203-80863 , 045_I21.ab1: 80205-80867 , 048_G06.ab1: 80198-80863

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012305_120 0.0 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
2 Hb_000847_140 0.095541597 - - -
3 Hb_015978_070 0.1334501629 - - -
4 Hb_000345_430 0.1392298256 - - 40S ribosomal protein S24A [Hevea brasiliensis]
5 Hb_001623_430 0.1428067381 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
6 Hb_007520_060 0.1454130546 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
7 Hb_009659_020 0.1476105213 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
8 Hb_000419_130 0.1483532245 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
9 Hb_030954_020 0.1498699218 - - hypothetical protein RCOM_1330200 [Ricinus communis]
10 Hb_020035_020 0.1548430879 - - PREDICTED: uncharacterized protein LOC105631020 [Jatropha curcas]
11 Hb_080477_060 0.1576566707 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001296_030 0.159749785 - - PREDICTED: uncharacterized protein LOC105638276 [Jatropha curcas]
13 Hb_001610_130 0.1611246888 - - 40S ribosomal protein S30 [Medicago truncatula]
14 Hb_000039_170 0.1691873503 - - protein MOTHER of FT and TF 1-like [Jatropha curcas]
15 Hb_003349_070 0.1728667721 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
16 Hb_042710_010 0.173097224 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
17 Hb_001629_100 0.1758910236 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
18 Hb_001754_010 0.1765850664 - - translationally controlled tumor protein [Hevea brasiliensis]
19 Hb_001587_060 0.1783825966 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007532_040 0.1795908579 - - -

Gene co-expression network

sample Hb_012305_120 Hb_012305_120 Hb_000847_140 Hb_000847_140 Hb_012305_120--Hb_000847_140 Hb_015978_070 Hb_015978_070 Hb_012305_120--Hb_015978_070 Hb_000345_430 Hb_000345_430 Hb_012305_120--Hb_000345_430 Hb_001623_430 Hb_001623_430 Hb_012305_120--Hb_001623_430 Hb_007520_060 Hb_007520_060 Hb_012305_120--Hb_007520_060 Hb_009659_020 Hb_009659_020 Hb_012305_120--Hb_009659_020 Hb_008699_040 Hb_008699_040 Hb_000847_140--Hb_008699_040 Hb_000039_170 Hb_000039_170 Hb_000847_140--Hb_000039_170 Hb_000847_140--Hb_015978_070 Hb_004474_010 Hb_004474_010 Hb_000847_140--Hb_004474_010 Hb_000847_140--Hb_001623_430 Hb_000367_170 Hb_000367_170 Hb_015978_070--Hb_000367_170 Hb_001575_030 Hb_001575_030 Hb_015978_070--Hb_001575_030 Hb_015978_070--Hb_000345_430 Hb_001610_130 Hb_001610_130 Hb_015978_070--Hb_001610_130 Hb_000419_130 Hb_000419_130 Hb_015978_070--Hb_000419_130 Hb_000345_430--Hb_009659_020 Hb_129204_010 Hb_129204_010 Hb_000345_430--Hb_129204_010 Hb_000345_430--Hb_007520_060 Hb_001587_060 Hb_001587_060 Hb_000345_430--Hb_001587_060 Hb_003349_070 Hb_003349_070 Hb_001623_430--Hb_003349_070 Hb_030954_020 Hb_030954_020 Hb_001623_430--Hb_030954_020 Hb_183086_040 Hb_183086_040 Hb_001623_430--Hb_183086_040 Hb_000780_210 Hb_000780_210 Hb_001623_430--Hb_000780_210 Hb_004333_030 Hb_004333_030 Hb_001623_430--Hb_004333_030 Hb_000922_100 Hb_000922_100 Hb_001623_430--Hb_000922_100 Hb_007520_060--Hb_009659_020 Hb_006541_020 Hb_006541_020 Hb_007520_060--Hb_006541_020 Hb_030565_040 Hb_030565_040 Hb_007520_060--Hb_030565_040 Hb_006718_010 Hb_006718_010 Hb_007520_060--Hb_006718_010 Hb_000367_210 Hb_000367_210 Hb_007520_060--Hb_000367_210 Hb_007520_060--Hb_000419_130 Hb_009659_020--Hb_030954_020 Hb_080477_060 Hb_080477_060 Hb_009659_020--Hb_080477_060 Hb_009659_020--Hb_001623_430 Hb_000820_130 Hb_000820_130 Hb_009659_020--Hb_000820_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
868.826 232.82 152.331 1315.57 617.632 7761.97
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10968.4 10825.7 2753.03 2041.52 142.533

CAGE analysis