Hb_012308_050

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig12308: 89775-94630
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10880g
description POPTRDRAFT_830259; auxin-responsive family protein
nr
ID XP_012068087.1
description PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
swissprot
ID Q38827
description Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1
trembl
ID A0A067L2Q8
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_15935 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07024: 89777-94733
cDNA
(Sanger)
(ID:Location)		 001_O10.ab1: 92084-93237 , 011_A10.ab1: 92085-93237

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012308_050 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
2 Hb_007483_120 0.081404985 - - 60S ribosomal protein L32A [Hevea brasiliensis]
3 Hb_002510_100 0.1013528179 - - Root phototropism protein, putative [Ricinus communis]
4 Hb_000654_050 0.103133365 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
5 Hb_002849_180 0.106679199 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
6 Hb_005724_040 0.1265562197 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
7 Hb_000320_270 0.1285476452 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
8 Hb_000320_450 0.1410082078 - - secretory peroxidase [Hevea brasiliensis]
9 Hb_001675_310 0.1424561453 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
10 Hb_000613_250 0.1433325326 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
11 Hb_004678_030 0.1441031421 - - fructokinase [Manihot esculenta]
12 Hb_000069_430 0.1448967038 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
13 Hb_000181_230 0.1465252461 - - copper ion binding protein, putative [Ricinus communis]
14 Hb_000007_440 0.1479552757 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
15 Hb_002685_160 0.150773755 - - leucine-rich repeat protein, putative [Ricinus communis]
16 Hb_002235_370 0.1525388685 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
17 Hb_083493_010 0.1536737736 - - Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_000685_020 0.1548760999 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
19 Hb_000061_310 0.1552463966 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
20 Hb_000366_050 0.1553980108 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_012308_050 Hb_012308_050 Hb_007483_120 Hb_007483_120 Hb_012308_050--Hb_007483_120 Hb_002510_100 Hb_002510_100 Hb_012308_050--Hb_002510_100 Hb_000654_050 Hb_000654_050 Hb_012308_050--Hb_000654_050 Hb_002849_180 Hb_002849_180 Hb_012308_050--Hb_002849_180 Hb_005724_040 Hb_005724_040 Hb_012308_050--Hb_005724_040 Hb_000320_270 Hb_000320_270 Hb_012308_050--Hb_000320_270 Hb_007483_120--Hb_005724_040 Hb_000181_230 Hb_000181_230 Hb_007483_120--Hb_000181_230 Hb_007483_120--Hb_002510_100 Hb_002685_160 Hb_002685_160 Hb_007483_120--Hb_002685_160 Hb_000685_020 Hb_000685_020 Hb_007483_120--Hb_000685_020 Hb_000613_250 Hb_000613_250 Hb_002510_100--Hb_000613_250 Hb_001013_050 Hb_001013_050 Hb_002510_100--Hb_001013_050 Hb_003849_200 Hb_003849_200 Hb_002510_100--Hb_003849_200 Hb_001048_070 Hb_001048_070 Hb_002510_100--Hb_001048_070 Hb_004678_030 Hb_004678_030 Hb_000654_050--Hb_004678_030 Hb_002463_050 Hb_002463_050 Hb_000654_050--Hb_002463_050 Hb_000654_050--Hb_000320_270 Hb_000061_310 Hb_000061_310 Hb_000654_050--Hb_000061_310 Hb_001054_040 Hb_001054_040 Hb_000654_050--Hb_001054_040 Hb_000007_440 Hb_000007_440 Hb_002849_180--Hb_000007_440 Hb_000320_450 Hb_000320_450 Hb_002849_180--Hb_000320_450 Hb_006483_090 Hb_006483_090 Hb_002849_180--Hb_006483_090 Hb_007483_080 Hb_007483_080 Hb_002849_180--Hb_007483_080 Hb_002849_180--Hb_000613_250 Hb_005724_040--Hb_000181_230 Hb_002740_100 Hb_002740_100 Hb_005724_040--Hb_002740_100 Hb_001221_390 Hb_001221_390 Hb_005724_040--Hb_001221_390 Hb_002099_060 Hb_002099_060 Hb_005724_040--Hb_002099_060 Hb_005724_040--Hb_002685_160 Hb_001948_090 Hb_001948_090 Hb_000320_270--Hb_001948_090 Hb_005408_100 Hb_005408_100 Hb_000320_270--Hb_005408_100 Hb_000230_470 Hb_000230_470 Hb_000320_270--Hb_000230_470 Hb_001102_200 Hb_001102_200 Hb_000320_270--Hb_001102_200 Hb_003912_080 Hb_003912_080 Hb_000320_270--Hb_003912_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.6911 173.395 163.15 214.311 7.55326 24.2207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.358514 0.211544 0.0884493 77.4569 117.956

CAGE analysis