Hb_012322_010

Information

Type -
Description -
Location Contig12322: 5269-18949
Sequence    

Annotation

kegg
ID rcu:RCOM_1378890
description Aspartic proteinase nepenthesin-1 precursor, putative
nr
ID XP_002515672.1
description Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
swissprot
ID Q9S9K4
description Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2
trembl
ID B9RPK3
description Aspartic proteinase nepenthesin-1, putative OS=Ricinus communis GN=RCOM_1378890 PE=4 SV=1
Gene Ontology
ID GO:0005622
description aspartic proteinase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07077: 5182-52146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012322_010 0.0 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
2 Hb_000192_080 0.0672165206 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
3 Hb_187953_010 0.0701610835 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
4 Hb_007638_030 0.0704210676 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
5 Hb_000212_380 0.0783696097 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
6 Hb_000429_150 0.0806900993 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
7 Hb_000140_280 0.0807253917 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
8 Hb_000140_210 0.0827572665 - - sec10, putative [Ricinus communis]
9 Hb_000069_210 0.0834044243 - - PREDICTED: exportin-2 [Jatropha curcas]
10 Hb_000009_560 0.0851178102 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
11 Hb_000665_060 0.0853530268 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
12 Hb_054865_150 0.0873459299 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
13 Hb_000718_080 0.0891956768 - - hypothetical protein PRUPE_ppa005259mg [Prunus persica]
14 Hb_004567_090 0.0904050004 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
15 Hb_000174_180 0.0908544613 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_012498_010 0.0912712748 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
17 Hb_000127_040 0.0913630401 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
18 Hb_044736_010 0.0914474418 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000159_090 0.0918506239 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
20 Hb_009296_040 0.0920958073 - - hypothetical protein L484_007435 [Morus notabilis]

Gene co-expression network

sample Hb_012322_010 Hb_012322_010 Hb_000192_080 Hb_000192_080 Hb_012322_010--Hb_000192_080 Hb_187953_010 Hb_187953_010 Hb_012322_010--Hb_187953_010 Hb_007638_030 Hb_007638_030 Hb_012322_010--Hb_007638_030 Hb_000212_380 Hb_000212_380 Hb_012322_010--Hb_000212_380 Hb_000429_150 Hb_000429_150 Hb_012322_010--Hb_000429_150 Hb_000140_280 Hb_000140_280 Hb_012322_010--Hb_000140_280 Hb_000192_080--Hb_007638_030 Hb_000009_560 Hb_000009_560 Hb_000192_080--Hb_000009_560 Hb_000665_060 Hb_000665_060 Hb_000192_080--Hb_000665_060 Hb_000208_280 Hb_000208_280 Hb_000192_080--Hb_000208_280 Hb_004567_090 Hb_004567_090 Hb_000192_080--Hb_004567_090 Hb_000140_210 Hb_000140_210 Hb_187953_010--Hb_000140_210 Hb_000718_080 Hb_000718_080 Hb_187953_010--Hb_000718_080 Hb_085781_020 Hb_085781_020 Hb_187953_010--Hb_085781_020 Hb_000236_310 Hb_000236_310 Hb_187953_010--Hb_000236_310 Hb_001195_470 Hb_001195_470 Hb_187953_010--Hb_001195_470 Hb_000159_090 Hb_000159_090 Hb_007638_030--Hb_000159_090 Hb_010964_040 Hb_010964_040 Hb_007638_030--Hb_010964_040 Hb_007638_030--Hb_000140_280 Hb_007638_030--Hb_000429_150 Hb_007638_030--Hb_004567_090 Hb_002110_190 Hb_002110_190 Hb_007638_030--Hb_002110_190 Hb_002909_140 Hb_002909_140 Hb_000212_380--Hb_002909_140 Hb_001936_130 Hb_001936_130 Hb_000212_380--Hb_001936_130 Hb_002169_050 Hb_002169_050 Hb_000212_380--Hb_002169_050 Hb_001004_070 Hb_001004_070 Hb_000212_380--Hb_001004_070 Hb_012498_010 Hb_012498_010 Hb_000212_380--Hb_012498_010 Hb_000429_150--Hb_000140_280 Hb_002414_050 Hb_002414_050 Hb_000429_150--Hb_002414_050 Hb_000429_150--Hb_004567_090 Hb_002414_060 Hb_002414_060 Hb_000429_150--Hb_002414_060 Hb_001571_050 Hb_001571_050 Hb_000429_150--Hb_001571_050 Hb_000140_280--Hb_000159_090 Hb_000140_280--Hb_010964_040 Hb_000392_190 Hb_000392_190 Hb_000140_280--Hb_000392_190 Hb_099878_030 Hb_099878_030 Hb_000140_280--Hb_099878_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.70092 5.75176 3.66026 12.0191 6.13961 12.9286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.80133 6.06275 10.5411 9.43057 9.23253

CAGE analysis