Hb_012322_020

Information

Type -
Description -
Location Contig12322: 48341-51942
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07077: 5182-52146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012322_020 0.0 - - -
2 Hb_000146_050 0.0644198327 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
3 Hb_000009_400 0.0721484229 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
4 Hb_001051_080 0.0722580145 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
5 Hb_001635_160 0.073336992 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
6 Hb_172632_120 0.0782064338 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002235_210 0.0789087093 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
8 Hb_000260_330 0.0801578837 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
9 Hb_001018_130 0.0837653769 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
10 Hb_000025_630 0.0869795787 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
11 Hb_005460_050 0.0897045704 - - COR413-PM2, putative [Ricinus communis]
12 Hb_005276_060 0.0897841475 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
13 Hb_000107_230 0.0898529601 - - unknown [Medicago truncatula]
14 Hb_028512_020 0.0907536322 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
15 Hb_158062_010 0.0912381456 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
16 Hb_000025_180 0.0914791728 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
17 Hb_001882_050 0.0918963173 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
18 Hb_000603_150 0.0920826641 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
19 Hb_000309_040 0.0920964107 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
20 Hb_000322_070 0.092914321 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_012322_020 Hb_012322_020 Hb_000146_050 Hb_000146_050 Hb_012322_020--Hb_000146_050 Hb_000009_400 Hb_000009_400 Hb_012322_020--Hb_000009_400 Hb_001051_080 Hb_001051_080 Hb_012322_020--Hb_001051_080 Hb_001635_160 Hb_001635_160 Hb_012322_020--Hb_001635_160 Hb_172632_120 Hb_172632_120 Hb_012322_020--Hb_172632_120 Hb_002235_210 Hb_002235_210 Hb_012322_020--Hb_002235_210 Hb_090051_030 Hb_090051_030 Hb_000146_050--Hb_090051_030 Hb_001633_130 Hb_001633_130 Hb_000146_050--Hb_001633_130 Hb_158062_010 Hb_158062_010 Hb_000146_050--Hb_158062_010 Hb_000603_150 Hb_000603_150 Hb_000146_050--Hb_000603_150 Hb_000205_300 Hb_000205_300 Hb_000146_050--Hb_000205_300 Hb_005276_060 Hb_005276_060 Hb_000009_400--Hb_005276_060 Hb_000046_570 Hb_000046_570 Hb_000009_400--Hb_000046_570 Hb_000322_070 Hb_000322_070 Hb_000009_400--Hb_000322_070 Hb_003929_170 Hb_003929_170 Hb_000009_400--Hb_003929_170 Hb_005797_010 Hb_005797_010 Hb_000009_400--Hb_005797_010 Hb_004631_180 Hb_004631_180 Hb_001051_080--Hb_004631_180 Hb_007416_300 Hb_007416_300 Hb_001051_080--Hb_007416_300 Hb_000120_430 Hb_000120_430 Hb_001051_080--Hb_000120_430 Hb_033834_030 Hb_033834_030 Hb_001051_080--Hb_033834_030 Hb_000309_040 Hb_000309_040 Hb_001051_080--Hb_000309_040 Hb_003549_150 Hb_003549_150 Hb_001051_080--Hb_003549_150 Hb_005460_050 Hb_005460_050 Hb_001635_160--Hb_005460_050 Hb_008120_030 Hb_008120_030 Hb_001635_160--Hb_008120_030 Hb_000035_110 Hb_000035_110 Hb_001635_160--Hb_000035_110 Hb_105328_020 Hb_105328_020 Hb_001635_160--Hb_105328_020 Hb_001377_310 Hb_001377_310 Hb_001635_160--Hb_001377_310 Hb_002398_030 Hb_002398_030 Hb_001635_160--Hb_002398_030 Hb_000025_180 Hb_000025_180 Hb_172632_120--Hb_000025_180 Hb_000025_630 Hb_000025_630 Hb_172632_120--Hb_000025_630 Hb_001408_040 Hb_001408_040 Hb_172632_120--Hb_001408_040 Hb_172632_120--Hb_000603_150 Hb_001959_110 Hb_001959_110 Hb_172632_120--Hb_001959_110 Hb_001142_030 Hb_001142_030 Hb_172632_120--Hb_001142_030 Hb_002235_210--Hb_004631_180 Hb_002235_210--Hb_001051_080 Hb_003893_030 Hb_003893_030 Hb_002235_210--Hb_003893_030 Hb_006916_040 Hb_006916_040 Hb_002235_210--Hb_006916_040 Hb_004310_020 Hb_004310_020 Hb_002235_210--Hb_004310_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.99672 7.329 7.17733 15.2251 9.17304 11.5961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.83489 8.39975 6.07573 6.02563 5.3886

CAGE analysis