Hb_012324_020

Information

Type -
Description -
Location Contig12324: 7029-7687
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012324_020 0.0 - - -
2 Hb_094721_010 0.0031709665 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
3 Hb_000003_770 0.1426608038 - - -
4 Hb_088496_010 0.1456081677 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
5 Hb_001379_130 0.1576904571 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
6 Hb_004297_030 0.1600319401 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
7 Hb_005408_040 0.174394287 - - -
8 Hb_145890_010 0.1832895959 - - unnamed protein product [Vitis vinifera]
9 Hb_000348_040 0.2152918974 - - -
10 Hb_000738_010 0.232651998 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
11 Hb_039305_010 0.2340833594 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
12 Hb_020247_060 0.234971478 - - UDP-glucoronosyl/UDP-glucosyl transferase family protein [Populus trichocarpa]
13 Hb_187024_070 0.2368047253 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
14 Hb_003837_020 0.2427649884 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
15 Hb_029299_010 0.2502818172 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
16 Hb_005222_020 0.2531042747 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
17 Hb_001369_260 0.2635410576 - - aldo-keto reductase, putative [Ricinus communis]
18 Hb_008092_140 0.2644485709 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
19 Hb_001257_020 0.2679102552 - - -
20 Hb_006501_030 0.2679725773 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]

Gene co-expression network

sample Hb_012324_020 Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_012324_020--Hb_094721_010 Hb_000003_770 Hb_000003_770 Hb_012324_020--Hb_000003_770 Hb_088496_010 Hb_088496_010 Hb_012324_020--Hb_088496_010 Hb_001379_130 Hb_001379_130 Hb_012324_020--Hb_001379_130 Hb_004297_030 Hb_004297_030 Hb_012324_020--Hb_004297_030 Hb_005408_040 Hb_005408_040 Hb_012324_020--Hb_005408_040 Hb_094721_010--Hb_000003_770 Hb_094721_010--Hb_088496_010 Hb_094721_010--Hb_004297_030 Hb_094721_010--Hb_001379_130 Hb_094721_010--Hb_005408_040 Hb_000003_770--Hb_001379_130 Hb_000003_770--Hb_088496_010 Hb_001257_020 Hb_001257_020 Hb_000003_770--Hb_001257_020 Hb_000003_770--Hb_004297_030 Hb_088496_010--Hb_004297_030 Hb_088496_010--Hb_001379_130 Hb_088496_010--Hb_001257_020 Hb_001379_130--Hb_001257_020 Hb_001379_130--Hb_004297_030 Hb_015091_010 Hb_015091_010 Hb_004297_030--Hb_015091_010 Hb_000348_040 Hb_000348_040 Hb_004297_030--Hb_000348_040 Hb_000395_060 Hb_000395_060 Hb_005408_040--Hb_000395_060 Hb_000107_640 Hb_000107_640 Hb_005408_040--Hb_000107_640 Hb_005408_040--Hb_000003_770 Hb_005408_040--Hb_001379_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.270705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.529014 0.83103 0 0 0

CAGE analysis