Hb_012325_010

Information

Type -
Description -
Location Contig12325: 1727-21487
Sequence    

Annotation

kegg
ID rcu:RCOM_0068670
description hypothetical protein
nr
ID XP_002533047.1
description hypothetical protein RCOM_0068670 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T478
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0068670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07080: 4815-6184 , PASA_asmbl_07081: 6358-12426 , PASA_asmbl_07083: 10723-10877 , PASA_asmbl_07085: 13280-21204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012325_010 0.0 - - hypothetical protein RCOM_0068670 [Ricinus communis]
2 Hb_006916_110 0.0811792549 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
3 Hb_000227_330 0.0817396345 - - Acyl-CoA synthetase [Ricinus communis]
4 Hb_000342_050 0.0853624485 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
5 Hb_000125_180 0.0980633476 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
6 Hb_000157_070 0.0994190815 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
7 Hb_020805_180 0.1008213582 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
8 Hb_000683_050 0.1031052975 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
9 Hb_000109_260 0.1040728658 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
10 Hb_000787_200 0.1048903912 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000317_350 0.1069017985 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
12 Hb_001159_020 0.1093106664 - - -
13 Hb_005854_040 0.1096898527 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011674_040 0.1112171799 - - PREDICTED: uncharacterized protein LOC105648163 isoform X1 [Jatropha curcas]
15 Hb_001811_170 0.1118657656 - - dynamin, putative [Ricinus communis]
16 Hb_001564_070 0.1125396363 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
17 Hb_028960_030 0.1127885891 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
18 Hb_080147_050 0.1156447142 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
19 Hb_000922_260 0.1157462696 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
20 Hb_001900_100 0.116511651 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012325_010 Hb_012325_010 Hb_006916_110 Hb_006916_110 Hb_012325_010--Hb_006916_110 Hb_000227_330 Hb_000227_330 Hb_012325_010--Hb_000227_330 Hb_000342_050 Hb_000342_050 Hb_012325_010--Hb_000342_050 Hb_000125_180 Hb_000125_180 Hb_012325_010--Hb_000125_180 Hb_000157_070 Hb_000157_070 Hb_012325_010--Hb_000157_070 Hb_020805_180 Hb_020805_180 Hb_012325_010--Hb_020805_180 Hb_042474_010 Hb_042474_010 Hb_006916_110--Hb_042474_010 Hb_021576_010 Hb_021576_010 Hb_006916_110--Hb_021576_010 Hb_006916_110--Hb_000342_050 Hb_000209_100 Hb_000209_100 Hb_006916_110--Hb_000209_100 Hb_000190_090 Hb_000190_090 Hb_006916_110--Hb_000190_090 Hb_053575_020 Hb_053575_020 Hb_000227_330--Hb_053575_020 Hb_000227_330--Hb_000125_180 Hb_000317_350 Hb_000317_350 Hb_000227_330--Hb_000317_350 Hb_000205_250 Hb_000205_250 Hb_000227_330--Hb_000205_250 Hb_000271_120 Hb_000271_120 Hb_000227_330--Hb_000271_120 Hb_004837_280 Hb_004837_280 Hb_000342_050--Hb_004837_280 Hb_001811_170 Hb_001811_170 Hb_000342_050--Hb_001811_170 Hb_001226_130 Hb_001226_130 Hb_000342_050--Hb_001226_130 Hb_000787_200 Hb_000787_200 Hb_000342_050--Hb_000787_200 Hb_001587_030 Hb_001587_030 Hb_000342_050--Hb_001587_030 Hb_000152_700 Hb_000152_700 Hb_000342_050--Hb_000152_700 Hb_005181_050 Hb_005181_050 Hb_000125_180--Hb_005181_050 Hb_002235_310 Hb_002235_310 Hb_000125_180--Hb_002235_310 Hb_000866_110 Hb_000866_110 Hb_000125_180--Hb_000866_110 Hb_011925_020 Hb_011925_020 Hb_000125_180--Hb_011925_020 Hb_001691_200 Hb_001691_200 Hb_000125_180--Hb_001691_200 Hb_000080_110 Hb_000080_110 Hb_000125_180--Hb_000080_110 Hb_135959_010 Hb_135959_010 Hb_000157_070--Hb_135959_010 Hb_000157_070--Hb_020805_180 Hb_002851_010 Hb_002851_010 Hb_000157_070--Hb_002851_010 Hb_080147_050 Hb_080147_050 Hb_000157_070--Hb_080147_050 Hb_000157_070--Hb_000342_050 Hb_003626_050 Hb_003626_050 Hb_000157_070--Hb_003626_050 Hb_020805_180--Hb_080147_050 Hb_000321_090 Hb_000321_090 Hb_020805_180--Hb_000321_090 Hb_020805_180--Hb_002851_010 Hb_000649_060 Hb_000649_060 Hb_020805_180--Hb_000649_060 Hb_002027_190 Hb_002027_190 Hb_020805_180--Hb_002027_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66815 4.92488 4.41889 6.02066 1.61864 1.50177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.21837 2.51128 1.39696 10.0392 6.99342

CAGE analysis