Hb_012325_030

Information

Type -
Description -
Location Contig12325: 52963-69351
Sequence    

Annotation

kegg
ID rcu:RCOM_0068890
description hypothetical protein
nr
ID XP_002533049.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8IGJ0
description Protein EFR3 homolog cmp44E OS=Drosophila melanogaster GN=stmA PE=2 SV=3
trembl
ID B9T480
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0068890 PE=4 SV=1
Gene Ontology
ID GO:0005488
description arm repeat superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07090: 53613-69022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012325_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000212_240 0.0923505693 - - short-chain dehydrogenase, putative [Ricinus communis]
3 Hb_002273_130 0.0923941584 - - PREDICTED: T-complex protein 1 subunit eta [Gossypium raimondii]
4 Hb_005503_040 0.0930893255 - - PREDICTED: AMP deaminase [Jatropha curcas]
5 Hb_001030_110 0.0970249799 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 isoform X1 [Jatropha curcas]
6 Hb_103012_010 0.0972810071 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
7 Hb_001195_560 0.0980912812 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
8 Hb_100215_010 0.0985412618 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
9 Hb_002273_120 0.0989160792 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
10 Hb_001541_090 0.0998294184 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_006445_010 0.1002971139 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
12 Hb_028308_010 0.1011439862 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
13 Hb_001085_320 0.1015610483 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]
14 Hb_002784_060 0.1017805161 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
15 Hb_080313_010 0.1021775461 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
16 Hb_002374_050 0.1033111794 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
17 Hb_000109_100 0.1040785913 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
18 Hb_030131_040 0.1044134781 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]
19 Hb_000160_290 0.1044237492 - - unnamed protein product [Vitis vinifera]
20 Hb_000023_190 0.1044311238 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]

Gene co-expression network

sample Hb_012325_030 Hb_012325_030 Hb_000212_240 Hb_000212_240 Hb_012325_030--Hb_000212_240 Hb_002273_130 Hb_002273_130 Hb_012325_030--Hb_002273_130 Hb_005503_040 Hb_005503_040 Hb_012325_030--Hb_005503_040 Hb_001030_110 Hb_001030_110 Hb_012325_030--Hb_001030_110 Hb_103012_010 Hb_103012_010 Hb_012325_030--Hb_103012_010 Hb_001195_560 Hb_001195_560 Hb_012325_030--Hb_001195_560 Hb_004881_020 Hb_004881_020 Hb_000212_240--Hb_004881_020 Hb_006252_040 Hb_006252_040 Hb_000212_240--Hb_006252_040 Hb_002716_130 Hb_002716_130 Hb_000212_240--Hb_002716_130 Hb_000025_110 Hb_000025_110 Hb_000212_240--Hb_000025_110 Hb_004117_130 Hb_004117_130 Hb_000212_240--Hb_004117_130 Hb_000606_090 Hb_000606_090 Hb_000212_240--Hb_000606_090 Hb_030131_040 Hb_030131_040 Hb_002273_130--Hb_030131_040 Hb_001341_120 Hb_001341_120 Hb_002273_130--Hb_001341_120 Hb_001541_090 Hb_001541_090 Hb_002273_130--Hb_001541_090 Hb_000076_270 Hb_000076_270 Hb_002273_130--Hb_000076_270 Hb_000059_150 Hb_000059_150 Hb_002273_130--Hb_000059_150 Hb_001300_070 Hb_001300_070 Hb_002273_130--Hb_001300_070 Hb_080313_010 Hb_080313_010 Hb_005503_040--Hb_080313_010 Hb_000683_070 Hb_000683_070 Hb_005503_040--Hb_000683_070 Hb_004668_060 Hb_004668_060 Hb_005503_040--Hb_004668_060 Hb_000617_100 Hb_000617_100 Hb_005503_040--Hb_000617_100 Hb_007508_080 Hb_007508_080 Hb_005503_040--Hb_007508_080 Hb_100215_010 Hb_100215_010 Hb_005503_040--Hb_100215_010 Hb_000291_060 Hb_000291_060 Hb_001030_110--Hb_000291_060 Hb_154114_010 Hb_154114_010 Hb_001030_110--Hb_154114_010 Hb_001030_110--Hb_000617_100 Hb_000789_310 Hb_000789_310 Hb_001030_110--Hb_000789_310 Hb_002805_190 Hb_002805_190 Hb_001030_110--Hb_002805_190 Hb_001143_180 Hb_001143_180 Hb_001030_110--Hb_001143_180 Hb_001946_010 Hb_001946_010 Hb_103012_010--Hb_001946_010 Hb_000260_170 Hb_000260_170 Hb_103012_010--Hb_000260_170 Hb_000538_100 Hb_000538_100 Hb_103012_010--Hb_000538_100 Hb_007317_110 Hb_007317_110 Hb_103012_010--Hb_007317_110 Hb_011930_160 Hb_011930_160 Hb_103012_010--Hb_011930_160 Hb_002783_240 Hb_002783_240 Hb_103012_010--Hb_002783_240 Hb_007426_150 Hb_007426_150 Hb_001195_560--Hb_007426_150 Hb_003018_130 Hb_003018_130 Hb_001195_560--Hb_003018_130 Hb_028308_010 Hb_028308_010 Hb_001195_560--Hb_028308_010 Hb_001195_560--Hb_000617_100 Hb_014361_070 Hb_014361_070 Hb_001195_560--Hb_014361_070 Hb_002823_030 Hb_002823_030 Hb_001195_560--Hb_002823_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.372 10.6143 8.54188 12.5534 16.9933 20.762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3928 4.2644 5.87356 10.9668 8.72045

CAGE analysis