Hb_012330_030

Information

Type -
Description -
Location Contig12330: 36624-36989
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012330_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000764_050 0.0450212704 - - hypothetical protein JCGZ_09935 [Jatropha curcas]
3 Hb_000585_090 0.0962479318 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105114407 [Populus euphratica]
4 Hb_026532_010 0.1328879212 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
5 Hb_001662_020 0.1349986709 - - PREDICTED: F-box protein SKIP23-like isoform X3 [Eucalyptus grandis]
6 Hb_011616_060 0.135096794 - - PREDICTED: uncharacterized protein LOC105789623 [Gossypium raimondii]
7 Hb_090778_010 0.1353232015 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]
8 Hb_124540_020 0.1364829408 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_010783_010 0.1416999026 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_001817_190 0.1418094633 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_001972_020 0.1419778186 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_004019_100 0.1427321242 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
13 Hb_001309_030 0.1428712141 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_000710_120 0.1431311273 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
15 Hb_008976_010 0.1435279404 - - -
16 Hb_009188_010 0.1449629092 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
17 Hb_011537_090 0.1484962103 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
18 Hb_097889_010 0.1503552061 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
19 Hb_006778_010 0.1858977497 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
20 Hb_007645_010 0.2126286822 - - NdhE, partial (chloroplast) [Podocalyx loranthoides]

Gene co-expression network

sample Hb_012330_030 Hb_012330_030 Hb_000764_050 Hb_000764_050 Hb_012330_030--Hb_000764_050 Hb_000585_090 Hb_000585_090 Hb_012330_030--Hb_000585_090 Hb_026532_010 Hb_026532_010 Hb_012330_030--Hb_026532_010 Hb_001662_020 Hb_001662_020 Hb_012330_030--Hb_001662_020 Hb_011616_060 Hb_011616_060 Hb_012330_030--Hb_011616_060 Hb_090778_010 Hb_090778_010 Hb_012330_030--Hb_090778_010 Hb_000764_050--Hb_000585_090 Hb_006778_010 Hb_006778_010 Hb_000764_050--Hb_006778_010 Hb_000764_050--Hb_026532_010 Hb_000002_470 Hb_000002_470 Hb_000764_050--Hb_000002_470 Hb_000003_630 Hb_000003_630 Hb_000764_050--Hb_000003_630 Hb_000585_090--Hb_000002_470 Hb_000585_090--Hb_000003_630 Hb_000004_050 Hb_000004_050 Hb_000585_090--Hb_000004_050 Hb_000007_350 Hb_000007_350 Hb_000585_090--Hb_000007_350 Hb_026532_010--Hb_001662_020 Hb_026532_010--Hb_011616_060 Hb_026532_010--Hb_090778_010 Hb_124540_020 Hb_124540_020 Hb_026532_010--Hb_124540_020 Hb_010783_010 Hb_010783_010 Hb_026532_010--Hb_010783_010 Hb_001817_190 Hb_001817_190 Hb_026532_010--Hb_001817_190 Hb_001662_020--Hb_011616_060 Hb_001662_020--Hb_090778_010 Hb_001662_020--Hb_124540_020 Hb_001662_020--Hb_010783_010 Hb_001662_020--Hb_001817_190 Hb_011616_060--Hb_090778_010 Hb_011616_060--Hb_124540_020 Hb_011616_060--Hb_010783_010 Hb_011616_060--Hb_001817_190 Hb_090778_010--Hb_124540_020 Hb_090778_010--Hb_010783_010 Hb_090778_010--Hb_001817_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0943979 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.953616

CAGE analysis