Hb_012338_010

Information

Type -
Description -
Location Contig12338: 15897-23389
Sequence    

Annotation

kegg
ID rcu:RCOM_0669600
description hypothetical protein
nr
ID XP_002520561.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3J2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0669600 PE=4 SV=1
Gene Ontology
ID GO:0016740
description sulfate adenylyltransferase subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07107: 16396-23223 , PASA_asmbl_07108: 16396-23227
cDNA
(Sanger)
(ID:Location)		 035_E19.ab1: 16411-22523

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012338_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004837_140 0.0617437695 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
3 Hb_000170_010 0.0635245096 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_000300_610 0.0701337058 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
5 Hb_004108_230 0.0727381239 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
6 Hb_000061_320 0.0731589417 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
7 Hb_005432_030 0.0779928937 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
8 Hb_005997_010 0.0789215548 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
9 Hb_003175_040 0.0796133615 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
10 Hb_009954_040 0.0826453928 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
11 Hb_002685_190 0.0837476175 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
12 Hb_004595_020 0.0840760468 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
13 Hb_002716_070 0.0855526374 - - PREDICTED: protein ABIL2 [Jatropha curcas]
14 Hb_002918_200 0.0879770525 - - -
15 Hb_000120_750 0.0885156701 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
16 Hb_002477_070 0.0886014679 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
17 Hb_003020_230 0.0888212905 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
18 Hb_026527_030 0.0890906257 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
19 Hb_004048_110 0.0911127916 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
20 Hb_001832_010 0.0927187889 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012338_010 Hb_012338_010 Hb_004837_140 Hb_004837_140 Hb_012338_010--Hb_004837_140 Hb_000170_010 Hb_000170_010 Hb_012338_010--Hb_000170_010 Hb_000300_610 Hb_000300_610 Hb_012338_010--Hb_000300_610 Hb_004108_230 Hb_004108_230 Hb_012338_010--Hb_004108_230 Hb_000061_320 Hb_000061_320 Hb_012338_010--Hb_000061_320 Hb_005432_030 Hb_005432_030 Hb_012338_010--Hb_005432_030 Hb_004837_140--Hb_000170_010 Hb_002918_200 Hb_002918_200 Hb_004837_140--Hb_002918_200 Hb_002963_010 Hb_002963_010 Hb_004837_140--Hb_002963_010 Hb_004837_140--Hb_004108_230 Hb_005997_010 Hb_005997_010 Hb_004837_140--Hb_005997_010 Hb_000170_010--Hb_002963_010 Hb_000170_010--Hb_005432_030 Hb_000625_070 Hb_000625_070 Hb_000170_010--Hb_000625_070 Hb_000170_010--Hb_002918_200 Hb_009954_040 Hb_009954_040 Hb_000300_610--Hb_009954_040 Hb_000486_010 Hb_000486_010 Hb_000300_610--Hb_000486_010 Hb_000300_610--Hb_000061_320 Hb_002685_190 Hb_002685_190 Hb_000300_610--Hb_002685_190 Hb_001278_110 Hb_001278_110 Hb_000300_610--Hb_001278_110 Hb_004108_230--Hb_002918_200 Hb_000120_750 Hb_000120_750 Hb_004108_230--Hb_000120_750 Hb_003175_040 Hb_003175_040 Hb_004108_230--Hb_003175_040 Hb_011794_070 Hb_011794_070 Hb_004108_230--Hb_011794_070 Hb_044662_070 Hb_044662_070 Hb_004108_230--Hb_044662_070 Hb_000061_320--Hb_009954_040 Hb_000061_320--Hb_003175_040 Hb_003020_230 Hb_003020_230 Hb_000061_320--Hb_003020_230 Hb_026527_030 Hb_026527_030 Hb_000061_320--Hb_026527_030 Hb_002027_210 Hb_002027_210 Hb_005432_030--Hb_002027_210 Hb_005432_030--Hb_000625_070 Hb_000496_060 Hb_000496_060 Hb_005432_030--Hb_000496_060 Hb_005432_030--Hb_004108_230 Hb_005432_030--Hb_003175_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.594 11.3581 18.0386 22.209 66.4787 72.9328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
117.598 102.86 73.0875 31.2739 34.5273

CAGE analysis