Hb_012339_010

Information

Type -
Description -
Location Contig12339: 10167-16814
Sequence    

Annotation

kegg
ID rcu:RCOM_0926500
description hypothetical protein
nr
ID XP_002515583.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RPB4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0926500 PE=4 SV=1
Gene Ontology
ID GO:0005622
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07110: 9952-15544
cDNA
(Sanger)
(ID:Location)		 026_H18.ab1: 10395-15523

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012339_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000665_190 0.1132548231 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011926_040 0.1191081669 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
4 Hb_003994_300 0.1195057895 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001049_150 0.1262793566 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
6 Hb_000399_060 0.1280469845 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
7 Hb_002174_040 0.1327443124 - - DNAJ heat shock family protein [Theobroma cacao]
8 Hb_000796_150 0.1354446567 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
9 Hb_000703_100 0.1393850358 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase-like [Jatropha curcas]
10 Hb_001004_080 0.1415147949 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
11 Hb_008566_040 0.141853427 - - PREDICTED: uncharacterized protein LOC105647590 isoform X1 [Jatropha curcas]
12 Hb_003462_110 0.1419927076 - - hevamine-A precursor, putative [Ricinus communis]
13 Hb_009661_030 0.1443385864 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]
14 Hb_000962_070 0.1446437758 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_000638_070 0.1465594286 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
16 Hb_000665_180 0.1485443551 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
17 Hb_001491_030 0.1490268788 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
18 Hb_009913_040 0.1504441881 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
19 Hb_000359_310 0.1545625274 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
20 Hb_000002_480 0.1572649954 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_012339_010 Hb_012339_010 Hb_000665_190 Hb_000665_190 Hb_012339_010--Hb_000665_190 Hb_011926_040 Hb_011926_040 Hb_012339_010--Hb_011926_040 Hb_003994_300 Hb_003994_300 Hb_012339_010--Hb_003994_300 Hb_001049_150 Hb_001049_150 Hb_012339_010--Hb_001049_150 Hb_000399_060 Hb_000399_060 Hb_012339_010--Hb_000399_060 Hb_002174_040 Hb_002174_040 Hb_012339_010--Hb_002174_040 Hb_000665_190--Hb_001049_150 Hb_000665_190--Hb_003994_300 Hb_027445_030 Hb_027445_030 Hb_000665_190--Hb_027445_030 Hb_003746_010 Hb_003746_010 Hb_000665_190--Hb_003746_010 Hb_003540_080 Hb_003540_080 Hb_000665_190--Hb_003540_080 Hb_000665_190--Hb_011926_040 Hb_009913_040 Hb_009913_040 Hb_011926_040--Hb_009913_040 Hb_011926_040--Hb_000399_060 Hb_006006_060 Hb_006006_060 Hb_011926_040--Hb_006006_060 Hb_000173_060 Hb_000173_060 Hb_011926_040--Hb_000173_060 Hb_174865_040 Hb_174865_040 Hb_011926_040--Hb_174865_040 Hb_000638_070 Hb_000638_070 Hb_011926_040--Hb_000638_070 Hb_003994_300--Hb_027445_030 Hb_007477_050 Hb_007477_050 Hb_003994_300--Hb_007477_050 Hb_003994_300--Hb_003746_010 Hb_003994_300--Hb_001049_150 Hb_003994_300--Hb_000399_060 Hb_001623_080 Hb_001623_080 Hb_001049_150--Hb_001623_080 Hb_001049_150--Hb_011926_040 Hb_026549_070 Hb_026549_070 Hb_001049_150--Hb_026549_070 Hb_000062_400 Hb_000062_400 Hb_001049_150--Hb_000062_400 Hb_001976_060 Hb_001976_060 Hb_001049_150--Hb_001976_060 Hb_000320_340 Hb_000320_340 Hb_000399_060--Hb_000320_340 Hb_000014_040 Hb_000014_040 Hb_000399_060--Hb_000014_040 Hb_000665_180 Hb_000665_180 Hb_000399_060--Hb_000665_180 Hb_001157_230 Hb_001157_230 Hb_000399_060--Hb_001157_230 Hb_008406_180 Hb_008406_180 Hb_000399_060--Hb_008406_180 Hb_031527_110 Hb_031527_110 Hb_002174_040--Hb_031527_110 Hb_012573_050 Hb_012573_050 Hb_002174_040--Hb_012573_050 Hb_000181_350 Hb_000181_350 Hb_002174_040--Hb_000181_350 Hb_001663_040 Hb_001663_040 Hb_002174_040--Hb_001663_040 Hb_011224_100 Hb_011224_100 Hb_002174_040--Hb_011224_100 Hb_002184_090 Hb_002184_090 Hb_002174_040--Hb_002184_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.81108 6.67943 27.1872 62.5842 19.3658 12.0032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5016 11.6544 15.0489 5.38074 32.5001

CAGE analysis