Hb_012340_020

Information

Type -
Description -
Location Contig12340: 11316-13136
Sequence    

Annotation

kegg
ID rcu:RCOM_1719180
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012085832.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
swissprot
ID Q9LJR6
description Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3 SV=1
trembl
ID A0A067K3I5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17522 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012340_020 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
2 Hb_001534_070 0.1101580552 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Eucalyptus grandis]
3 Hb_002374_440 0.1213927893 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000206_130 0.1278920205 - - unnamed protein product [Vitis vinifera]
5 Hb_010068_030 0.1324887854 - - aconitase, putative [Ricinus communis]
6 Hb_002918_310 0.1339880475 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
7 Hb_003688_200 0.1437324629 - - conserved hypothetical protein [Ricinus communis]
8 Hb_029388_040 0.1439379742 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
9 Hb_000720_070 0.1491704573 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
10 Hb_017711_020 0.151462115 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
11 Hb_000152_560 0.1514786515 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
12 Hb_006816_120 0.152861077 - - Nicotianamine synthase, putative [Ricinus communis]
13 Hb_000008_230 0.1532624992 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
14 Hb_008749_050 0.16043164 - - PREDICTED: uncharacterized J domain-containing protein C4H3.01 [Jatropha curcas]
15 Hb_002344_090 0.1626373463 - - PREDICTED: uncharacterized protein LOC105637976 [Jatropha curcas]
16 Hb_005228_100 0.1656896681 - - -
17 Hb_001769_020 0.168093467 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
18 Hb_002168_020 0.1709439518 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000258_130 0.174548629 - - -
20 Hb_004374_050 0.1779751781 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012340_020 Hb_012340_020 Hb_001534_070 Hb_001534_070 Hb_012340_020--Hb_001534_070 Hb_002374_440 Hb_002374_440 Hb_012340_020--Hb_002374_440 Hb_000206_130 Hb_000206_130 Hb_012340_020--Hb_000206_130 Hb_010068_030 Hb_010068_030 Hb_012340_020--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_012340_020--Hb_002918_310 Hb_003688_200 Hb_003688_200 Hb_012340_020--Hb_003688_200 Hb_000120_570 Hb_000120_570 Hb_001534_070--Hb_000120_570 Hb_000720_070 Hb_000720_070 Hb_001534_070--Hb_000720_070 Hb_001534_070--Hb_010068_030 Hb_001534_070--Hb_002918_310 Hb_006501_060 Hb_006501_060 Hb_001534_070--Hb_006501_060 Hb_029388_040 Hb_029388_040 Hb_002374_440--Hb_029388_040 Hb_005228_100 Hb_005228_100 Hb_002374_440--Hb_005228_100 Hb_004374_050 Hb_004374_050 Hb_002374_440--Hb_004374_050 Hb_001769_020 Hb_001769_020 Hb_002374_440--Hb_001769_020 Hb_002374_440--Hb_003688_200 Hb_000206_130--Hb_001534_070 Hb_000206_130--Hb_003688_200 Hb_000206_130--Hb_002374_440 Hb_182807_020 Hb_182807_020 Hb_000206_130--Hb_182807_020 Hb_006816_120 Hb_006816_120 Hb_000206_130--Hb_006816_120 Hb_003097_190 Hb_003097_190 Hb_010068_030--Hb_003097_190 Hb_000152_560 Hb_000152_560 Hb_010068_030--Hb_000152_560 Hb_000422_140 Hb_000422_140 Hb_010068_030--Hb_000422_140 Hb_002890_030 Hb_002890_030 Hb_010068_030--Hb_002890_030 Hb_002499_070 Hb_002499_070 Hb_010068_030--Hb_002499_070 Hb_000258_130 Hb_000258_130 Hb_010068_030--Hb_000258_130 Hb_002918_310--Hb_000720_070 Hb_002965_030 Hb_002965_030 Hb_002918_310--Hb_002965_030 Hb_035947_010 Hb_035947_010 Hb_002918_310--Hb_035947_010 Hb_002918_310--Hb_000152_560 Hb_003688_200--Hb_010068_030 Hb_003688_200--Hb_000120_570 Hb_003688_200--Hb_003097_190 Hb_000755_080 Hb_000755_080 Hb_003688_200--Hb_000755_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.34496 5.70648 0.652858 1.24316 16.6432 7.0491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6537 2.1094 1.6405 0.800756 0.955452

CAGE analysis