Hb_012340_030

Information

Type -
Description -
Location Contig12340: 14807-19452
Sequence    

Annotation

kegg
ID cic:CICLE_v10022271mg
description hypothetical protein
nr
ID XP_012085079.1
description PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
swissprot
ID Q8K3X6
description Ankyrin repeat and SAM domain-containing protein 4B OS=Mus musculus GN=Anks4b PE=1 SV=1
trembl
ID A0A067JR58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17525 PE=4 SV=1
Gene Ontology
ID GO:0016740
description ankyrin repeat and sam domain-containing protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07125: 14767-19542 , PASA_asmbl_07126: 16706-16909 , PASA_asmbl_07128: 17572-17758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012340_030 0.0 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
2 Hb_168918_020 0.0501501444 - - pectin acetylesterase, putative [Ricinus communis]
3 Hb_001823_100 0.0550997721 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
4 Hb_000107_390 0.0591608387 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
5 Hb_000017_120 0.0630366385 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
6 Hb_002272_250 0.074556339 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_118419_020 0.0746585931 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
8 Hb_001776_110 0.0748514359 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
9 Hb_001030_120 0.0751381589 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
10 Hb_006447_010 0.0759187036 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
11 Hb_002997_170 0.0779247604 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
12 Hb_000500_130 0.0785933365 - - small GTPase [Hevea brasiliensis]
13 Hb_000905_190 0.0790284635 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
14 Hb_007152_020 0.0794172432 - - PREDICTED: zinc finger CCCH domain-containing protein 62 isoform X2 [Jatropha curcas]
15 Hb_003540_040 0.0802982531 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
16 Hb_004195_160 0.0827713036 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
17 Hb_000975_290 0.0830761315 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
18 Hb_003642_060 0.0831907266 - - hypothetical protein RCOM_1189860 [Ricinus communis]
19 Hb_000000_080 0.083974148 - - lipoate-protein ligase B, putative [Ricinus communis]
20 Hb_003609_040 0.084161963 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]

Gene co-expression network

sample Hb_012340_030 Hb_012340_030 Hb_168918_020 Hb_168918_020 Hb_012340_030--Hb_168918_020 Hb_001823_100 Hb_001823_100 Hb_012340_030--Hb_001823_100 Hb_000107_390 Hb_000107_390 Hb_012340_030--Hb_000107_390 Hb_000017_120 Hb_000017_120 Hb_012340_030--Hb_000017_120 Hb_002272_250 Hb_002272_250 Hb_012340_030--Hb_002272_250 Hb_118419_020 Hb_118419_020 Hb_012340_030--Hb_118419_020 Hb_168918_020--Hb_000107_390 Hb_168918_020--Hb_000017_120 Hb_002997_170 Hb_002997_170 Hb_168918_020--Hb_002997_170 Hb_001776_110 Hb_001776_110 Hb_168918_020--Hb_001776_110 Hb_168918_020--Hb_118419_020 Hb_001609_030 Hb_001609_030 Hb_001823_100--Hb_001609_030 Hb_001274_030 Hb_001274_030 Hb_001823_100--Hb_001274_030 Hb_000165_030 Hb_000165_030 Hb_001823_100--Hb_000165_030 Hb_001823_100--Hb_000017_120 Hb_007152_020 Hb_007152_020 Hb_001823_100--Hb_007152_020 Hb_000538_020 Hb_000538_020 Hb_000107_390--Hb_000538_020 Hb_000107_390--Hb_000017_120 Hb_000771_110 Hb_000771_110 Hb_000107_390--Hb_000771_110 Hb_000001_020 Hb_000001_020 Hb_000107_390--Hb_000001_020 Hb_001006_170 Hb_001006_170 Hb_000017_120--Hb_001006_170 Hb_001030_120 Hb_001030_120 Hb_000017_120--Hb_001030_120 Hb_004223_130 Hb_004223_130 Hb_000017_120--Hb_004223_130 Hb_002631_050 Hb_002631_050 Hb_000017_120--Hb_002631_050 Hb_000017_120--Hb_002272_250 Hb_000032_570 Hb_000032_570 Hb_002272_250--Hb_000032_570 Hb_005527_050 Hb_005527_050 Hb_002272_250--Hb_005527_050 Hb_011794_090 Hb_011794_090 Hb_002272_250--Hb_011794_090 Hb_003392_040 Hb_003392_040 Hb_002272_250--Hb_003392_040 Hb_150069_020 Hb_150069_020 Hb_002272_250--Hb_150069_020 Hb_010436_070 Hb_010436_070 Hb_118419_020--Hb_010436_070 Hb_000317_430 Hb_000317_430 Hb_118419_020--Hb_000317_430 Hb_000175_070 Hb_000175_070 Hb_118419_020--Hb_000175_070 Hb_125000_010 Hb_125000_010 Hb_118419_020--Hb_125000_010 Hb_002097_110 Hb_002097_110 Hb_118419_020--Hb_002097_110 Hb_007193_100 Hb_007193_100 Hb_118419_020--Hb_007193_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
188.799 39.8746 45.9939 32.7834 136.42 174.607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
138.909 154.151 135.354 36.4757 25.3349

CAGE analysis