Hb_012340_040

Information

Type -
Description -
Location Contig12340: 20096-21584
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24610g
description POPTRDRAFT_553189; hypothetical protein
nr
ID XP_011024641.1
description PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GQK3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s24610g PE=4 SV=1
Gene Ontology
ID GO:0016740
description omega-hydroxypalmitate o-feruloyl transferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012340_040 0.0 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase-like [Populus euphratica]
2 Hb_004829_020 0.0079131879 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000795_010 0.1132249952 - - -
4 Hb_004282_030 0.1800148271 - - hypothetical protein EUGRSUZ_B01857 [Eucalyptus grandis]
5 Hb_000174_280 0.1865050177 - - -
6 Hb_007761_010 0.2035019662 - - -
7 Hb_128173_010 0.2035424844 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
8 Hb_111332_010 0.2057238548 - - Dihydroneopterin aldolase [Morus notabilis]
9 Hb_105480_010 0.2081247453 - - -
10 Hb_003847_010 0.2131615076 - - -
11 Hb_005542_020 0.2141770711 - - lupus la ribonucleoprotein, putative [Ricinus communis]
12 Hb_006692_050 0.218367651 - - Chloroplastic lipocalin [Theobroma cacao]
13 Hb_013727_010 0.2317663728 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
14 Hb_062858_010 0.232309024 - - heat-shock protein, putative [Ricinus communis]
15 Hb_042026_010 0.2463545169 - - RNA binding protein, putative [Ricinus communis]
16 Hb_046609_010 0.2480749144 - - -
17 Hb_000230_340 0.2495851569 - - Transcription elongation factor, putative [Ricinus communis]
18 Hb_129358_010 0.2569281935 - - PREDICTED: AT-hook motif nuclear-localized protein 11-like [Jatropha curcas]
19 Hb_009268_110 0.2574958336 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
20 Hb_089491_010 0.2586216846 - - -

Gene co-expression network

sample Hb_012340_040 Hb_012340_040 Hb_004829_020 Hb_004829_020 Hb_012340_040--Hb_004829_020 Hb_000795_010 Hb_000795_010 Hb_012340_040--Hb_000795_010 Hb_004282_030 Hb_004282_030 Hb_012340_040--Hb_004282_030 Hb_000174_280 Hb_000174_280 Hb_012340_040--Hb_000174_280 Hb_007761_010 Hb_007761_010 Hb_012340_040--Hb_007761_010 Hb_128173_010 Hb_128173_010 Hb_012340_040--Hb_128173_010 Hb_004829_020--Hb_000795_010 Hb_004829_020--Hb_004282_030 Hb_004829_020--Hb_000174_280 Hb_004829_020--Hb_007761_010 Hb_004829_020--Hb_128173_010 Hb_006692_050 Hb_006692_050 Hb_000795_010--Hb_006692_050 Hb_000795_010--Hb_007761_010 Hb_000795_010--Hb_128173_010 Hb_042026_010 Hb_042026_010 Hb_000795_010--Hb_042026_010 Hb_010997_050 Hb_010997_050 Hb_004282_030--Hb_010997_050 Hb_098842_010 Hb_098842_010 Hb_004282_030--Hb_098842_010 Hb_000004_140 Hb_000004_140 Hb_004282_030--Hb_000004_140 Hb_124567_010 Hb_124567_010 Hb_004282_030--Hb_124567_010 Hb_003847_010 Hb_003847_010 Hb_000174_280--Hb_003847_010 Hb_001226_080 Hb_001226_080 Hb_000174_280--Hb_001226_080 Hb_062858_010 Hb_062858_010 Hb_000174_280--Hb_062858_010 Hb_002240_100 Hb_002240_100 Hb_000174_280--Hb_002240_100 Hb_007761_010--Hb_128173_010 Hb_111332_010 Hb_111332_010 Hb_007761_010--Hb_111332_010 Hb_105480_010 Hb_105480_010 Hb_007761_010--Hb_105480_010 Hb_005542_020 Hb_005542_020 Hb_007761_010--Hb_005542_020 Hb_007761_010--Hb_006692_050 Hb_013727_010 Hb_013727_010 Hb_007761_010--Hb_013727_010 Hb_128173_010--Hb_111332_010 Hb_128173_010--Hb_105480_010 Hb_128173_010--Hb_005542_020 Hb_128173_010--Hb_006692_050 Hb_128173_010--Hb_013727_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0247595 0.180463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0179402 0

CAGE analysis