Hb_012340_050

Information

Type -
Description -
Location Contig12340: 21927-26846
Sequence    

Annotation

kegg
ID vvi:100248761
description UBX domain-containing protein 4
nr
ID XP_012085081.1
description PREDICTED: actin-related protein 5 [Jatropha curcas]
swissprot
ID Q6GL77
description UBX domain-containing protein 1 OS=Xenopus tropicalis GN=ubxn1 PE=2 SV=1
trembl
ID A0A067K3I8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17527 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ubx domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07129: 23899-26859
cDNA
(Sanger)
(ID:Location)		 038_G22.ab1: 23899-26857

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012340_050 0.0 - - PREDICTED: actin-related protein 5 [Jatropha curcas]
2 Hb_000107_300 0.1046340459 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
3 Hb_005144_010 0.1083645495 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
4 Hb_000826_100 0.1152728537 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
5 Hb_002314_010 0.1168309724 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
6 Hb_000365_250 0.1180205238 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006452_110 0.1273306038 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
8 Hb_000363_320 0.1282253678 - - PREDICTED: V-type proton ATPase subunit e1 [Jatropha curcas]
9 Hb_000638_170 0.1288639376 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
10 Hb_003605_160 0.1314746302 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
11 Hb_003567_030 0.1323836758 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
12 Hb_019762_020 0.1343148604 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
13 Hb_002105_100 0.1349497782 - - protein with unknown function [Ricinus communis]
14 Hb_026314_020 0.1364784664 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
15 Hb_002303_060 0.1382975031 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000130_100 0.1393820837 - - hypothetical protein CICLE_v10022662mg [Citrus clementina]
17 Hb_004230_020 0.1405307618 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
18 Hb_007553_020 0.1422460699 - - conserved hypothetical protein [Ricinus communis]
19 Hb_171900_060 0.1425159293 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
20 Hb_000849_130 0.1452429002 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]

Gene co-expression network

sample Hb_012340_050 Hb_012340_050 Hb_000107_300 Hb_000107_300 Hb_012340_050--Hb_000107_300 Hb_005144_010 Hb_005144_010 Hb_012340_050--Hb_005144_010 Hb_000826_100 Hb_000826_100 Hb_012340_050--Hb_000826_100 Hb_002314_010 Hb_002314_010 Hb_012340_050--Hb_002314_010 Hb_000365_250 Hb_000365_250 Hb_012340_050--Hb_000365_250 Hb_006452_110 Hb_006452_110 Hb_012340_050--Hb_006452_110 Hb_000215_330 Hb_000215_330 Hb_000107_300--Hb_000215_330 Hb_000107_300--Hb_002314_010 Hb_003376_190 Hb_003376_190 Hb_000107_300--Hb_003376_190 Hb_002303_060 Hb_002303_060 Hb_000107_300--Hb_002303_060 Hb_005306_070 Hb_005306_070 Hb_000107_300--Hb_005306_070 Hb_000107_300--Hb_000826_100 Hb_005144_010--Hb_000365_250 Hb_005144_010--Hb_002314_010 Hb_005144_010--Hb_000107_300 Hb_045003_010 Hb_045003_010 Hb_005144_010--Hb_045003_010 Hb_145880_020 Hb_145880_020 Hb_005144_010--Hb_145880_020 Hb_003605_160 Hb_003605_160 Hb_000826_100--Hb_003605_160 Hb_000189_240 Hb_000189_240 Hb_000826_100--Hb_000189_240 Hb_007441_330 Hb_007441_330 Hb_000826_100--Hb_007441_330 Hb_008071_020 Hb_008071_020 Hb_000826_100--Hb_008071_020 Hb_026314_020 Hb_026314_020 Hb_000826_100--Hb_026314_020 Hb_026053_020 Hb_026053_020 Hb_000826_100--Hb_026053_020 Hb_002314_010--Hb_000215_330 Hb_002314_010--Hb_002303_060 Hb_002314_010--Hb_005306_070 Hb_001053_140 Hb_001053_140 Hb_002314_010--Hb_001053_140 Hb_002314_010--Hb_003605_160 Hb_000066_090 Hb_000066_090 Hb_000365_250--Hb_000066_090 Hb_000638_170 Hb_000638_170 Hb_000365_250--Hb_000638_170 Hb_002105_100 Hb_002105_100 Hb_000365_250--Hb_002105_100 Hb_000365_250--Hb_000107_300 Hb_000733_080 Hb_000733_080 Hb_006452_110--Hb_000733_080 Hb_003894_080 Hb_003894_080 Hb_006452_110--Hb_003894_080 Hb_000130_100 Hb_000130_100 Hb_006452_110--Hb_000130_100 Hb_005000_330 Hb_005000_330 Hb_006452_110--Hb_005000_330 Hb_001163_040 Hb_001163_040 Hb_006452_110--Hb_001163_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.186 0.76324 1.85532 6.66408 1.96903 1.27823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.74444 6.14943 2.61844 1.13391 1.23414

CAGE analysis